Experiment: Def Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0736 and Psest_0737 are separated by 189 nucleotides Psest_0737 and Psest_0738 are separated by 13 nucleotides Psest_0738 and Psest_0739 are separated by 148 nucleotides Psest_0739 and Psest_0740 are separated by 4 nucleotides
Psest_0736: Psest_0736 - Methyl-accepting chemotaxis protein, at 808,143 to 810,065
_0736
Psest_0737: Psest_0737 - Cu(I)-responsive transcriptional regulator, at 810,255 to 810,698
_0737
Psest_0738: Psest_0738 - copper-(or silver)-translocating P-type ATPase, at 810,712 to 813,090
_0738
Psest_0739: Psest_0739 - Copper chaperone, at 813,239 to 813,430
_0739
Psest_0740: Psest_0740 - Transcriptional regulator, at 813,435 to 814,199
_0740
Position (kb) 810
811
812
813
814 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.809 kb on + strand, within Psest_0736 at 809.810 kb on - strand, within Psest_0736 at 809.810 kb on - strand, within Psest_0736 at 809.810 kb on - strand, within Psest_0736 at 810.059 kb on + strand at 810.059 kb on + strand at 810.059 kb on + strand at 810.059 kb on + strand at 810.059 kb on + strand at 810.060 kb on - strand at 810.060 kb on - strand at 810.077 kb on + strand at 810.077 kb on + strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.078 kb on - strand at 810.084 kb on + strand at 810.084 kb on + strand at 810.084 kb on + strand at 810.084 kb on + strand at 810.085 kb on - strand at 810.085 kb on - strand at 810.085 kb on - strand at 810.152 kb on - strand at 810.165 kb on + strand at 810.165 kb on + strand at 810.166 kb on - strand at 810.166 kb on - strand at 810.166 kb on - strand at 810.641 kb on - strand, within Psest_0737 at 810.757 kb on + strand at 810.845 kb on + strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 810.846 kb on - strand at 811.374 kb on - strand, within Psest_0738 at 811.465 kb on + strand, within Psest_0738 at 811.465 kb on + strand, within Psest_0738 at 811.466 kb on - strand, within Psest_0738 at 811.466 kb on - strand at 811.466 kb on - strand, within Psest_0738 at 811.466 kb on - strand, within Psest_0738 at 811.466 kb on - strand, within Psest_0738 at 811.638 kb on + strand, within Psest_0738 at 812.300 kb on + strand, within Psest_0738 at 812.301 kb on - strand, within Psest_0738 at 812.301 kb on - strand, within Psest_0738 at 812.301 kb on - strand, within Psest_0738 at 812.349 kb on - strand, within Psest_0738 at 812.349 kb on - strand, within Psest_0738 at 812.349 kb on - strand, within Psest_0738 at 812.391 kb on - strand, within Psest_0738 at 812.483 kb on + strand, within Psest_0738 at 812.483 kb on + strand, within Psest_0738 at 812.483 kb on + strand, within Psest_0738 at 812.484 kb on - strand, within Psest_0738 at 812.484 kb on - strand, within Psest_0738 at 812.484 kb on - strand, within Psest_0738 at 812.509 kb on + strand, within Psest_0738 at 812.509 kb on + strand, within Psest_0738 at 812.509 kb on + strand, within Psest_0738 at 812.510 kb on - strand, within Psest_0738 at 812.696 kb on + strand, within Psest_0738 at 812.890 kb on + strand at 812.891 kb on - strand at 812.956 kb on - strand at 813.072 kb on + strand at 813.247 kb on - strand at 813.247 kb on - strand at 813.247 kb on - strand at 813.940 kb on + strand, within Psest_0740 at 813.940 kb on + strand, within Psest_0740 at 813.941 kb on - strand, within Psest_0740 at 813.941 kb on - strand, within Psest_0740
Per-strain Table
Position Strand Gene LocusTag Fraction Def Tetracycline 0.0004 mg/ml remove 809,809 + Psest_0736 0.87 -0.1 809,809 + Psest_0736 0.87 +0.3 809,809 + Psest_0736 0.87 -0.7 809,809 + Psest_0736 0.87 +0.9 809,809 + Psest_0736 0.87 -0.0 809,810 - Psest_0736 0.87 +0.3 809,810 - Psest_0736 0.87 +0.5 809,810 - Psest_0736 0.87 -0.1 810,059 + +0.2 810,059 + +0.9 810,059 + +0.9 810,059 + +0.2 810,059 + -0.2 810,060 - -0.4 810,060 - -0.7 810,077 + +1.1 810,077 + -0.1 810,078 - -0.9 810,078 - -0.4 810,078 - -0.1 810,078 - -0.8 810,078 - +1.9 810,084 + +0.9 810,084 + +1.5 810,084 + +0.8 810,084 + +0.6 810,085 - -0.7 810,085 - +0.9 810,085 - +0.9 810,152 - -0.1 810,165 + -0.4 810,165 + -0.1 810,166 - -0.5 810,166 - -1.1 810,166 - +0.9 810,641 - Psest_0737 0.87 -0.3 810,757 + +1.6 810,845 + -0.2 810,846 - +1.2 810,846 - +2.5 810,846 - +0.6 810,846 - +0.6 810,846 - +0.3 810,846 - +1.7 810,846 - +1.2 810,846 - +0.9 810,846 - +1.6 811,374 - Psest_0738 0.28 +0.9 811,465 + Psest_0738 0.32 +0.3 811,465 + Psest_0738 0.32 -0.1 811,466 - Psest_0738 0.32 +1.3 811,466 - +1.9 811,466 - Psest_0738 0.32 +1.9 811,466 - Psest_0738 0.32 +0.3 811,466 - Psest_0738 0.32 -0.8 811,638 + Psest_0738 0.39 +2.5 812,300 + Psest_0738 0.67 +0.5 812,301 - Psest_0738 0.67 -1.1 812,301 - Psest_0738 0.67 +1.4 812,301 - Psest_0738 0.67 +0.5 812,349 - Psest_0738 0.69 +0.9 812,349 - Psest_0738 0.69 +0.2 812,349 - Psest_0738 0.69 +1.2 812,391 - Psest_0738 0.71 -0.1 812,483 + Psest_0738 0.74 +0.5 812,483 + Psest_0738 0.74 -0.5 812,483 + Psest_0738 0.74 -1.0 812,484 - Psest_0738 0.74 +2.5 812,484 - Psest_0738 0.74 -1.7 812,484 - Psest_0738 0.74 -0.7 812,509 + Psest_0738 0.76 +0.2 812,509 + Psest_0738 0.76 -1.2 812,509 + Psest_0738 0.76 -1.4 812,510 - Psest_0738 0.76 +0.3 812,696 + Psest_0738 0.83 +0.2 812,890 + +0.5 812,891 - +0.8 812,956 - -0.1 813,072 + +3.4 813,247 - +0.9 813,247 - +0.0 813,247 - -0.1 813,940 + Psest_0740 0.66 +4.7 813,940 + Psest_0740 0.66 +5.7 813,941 - Psest_0740 0.66 +5.0 813,941 - Psest_0740 0.66 +4.4
Or see this region's nucleotide sequence