Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3695

Experiment: Def Tetracycline 0.0004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3693 and Psest_3694 overlap by 4 nucleotidesPsest_3694 and Psest_3695 overlap by 8 nucleotidesPsest_3695 and Psest_3696 overlap by 8 nucleotidesPsest_3696 and Psest_3697 overlap by 4 nucleotides Psest_3693: Psest_3693 - Glycosyltransferases involved in cell wall biogenesis, at 3,856,987 to 3,857,802 _3693 Psest_3694: Psest_3694 - Predicted acyltransferase, at 3,857,799 to 3,858,743 _3694 Psest_3695: Psest_3695 - Histidine ammonia-lyase, at 3,858,736 to 3,860,268 _3695 Psest_3696: Psest_3696 - Predicted thioesterase, at 3,860,261 to 3,860,686 _3696 Psest_3697: Psest_3697 - Outer membrane lipoprotein carrier protein LolA., at 3,860,683 to 3,861,294 _3697 Position (kb) 3858 3859 3860 3861Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3857.922 kb on + strand, within Psest_3694at 3857.923 kb on - strand, within Psest_3694at 3857.937 kb on + strand, within Psest_3694at 3857.937 kb on + strand, within Psest_3694at 3857.938 kb on - strand, within Psest_3694at 3857.938 kb on - strand, within Psest_3694at 3857.943 kb on + strand, within Psest_3694at 3857.943 kb on + strand, within Psest_3694at 3857.983 kb on - strand, within Psest_3694at 3857.983 kb on - strand, within Psest_3694at 3858.247 kb on + strand, within Psest_3694at 3858.247 kb on + strand, within Psest_3694at 3858.247 kb on + strand, within Psest_3694at 3858.248 kb on - strand, within Psest_3694at 3858.248 kb on - strand, within Psest_3694at 3858.248 kb on - strand, within Psest_3694at 3858.248 kb on - strand, within Psest_3694at 3858.265 kb on + strand, within Psest_3694at 3858.706 kb on - strandat 3858.852 kb on - strandat 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strandat 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.904 kb on + strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3858.905 kb on - strand, within Psest_3695at 3859.198 kb on + strand, within Psest_3695at 3859.198 kb on + strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.199 kb on - strand, within Psest_3695at 3859.281 kb on - strand, within Psest_3695at 3859.385 kb on - strand, within Psest_3695at 3859.724 kb on - strand, within Psest_3695at 3859.724 kb on - strand, within Psest_3695at 3859.826 kb on - strand, within Psest_3695at 3860.266 kb on + strandat 3860.278 kb on - strandat 3860.278 kb on - strandat 3860.352 kb on - strand, within Psest_3696at 3860.352 kb on - strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.361 kb on - strand, within Psest_3696at 3860.361 kb on - strand, within Psest_3696at 3860.361 kb on - strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.454 kb on + strand, within Psest_3696at 3860.454 kb on + strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.465 kb on + strand, within Psest_3696at 3860.465 kb on + strand, within Psest_3696at 3860.465 kb on + strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.503 kb on - strand, within Psest_3696at 3860.546 kb on + strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.805 kb on - strand, within Psest_3697at 3861.198 kb on - strand, within Psest_3697at 3861.198 kb on - strand, within Psest_3697

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Tetracycline 0.0004 mg/ml
remove
3,857,922 + Psest_3694 0.13 +0.4
3,857,923 - Psest_3694 0.13 +0.4
3,857,937 + Psest_3694 0.15 +0.9
3,857,937 + Psest_3694 0.15 +0.9
3,857,938 - Psest_3694 0.15 -0.1
3,857,938 - Psest_3694 0.15 +0.6
3,857,943 + Psest_3694 0.15 +0.9
3,857,943 + Psest_3694 0.15 -1.1
3,857,983 - Psest_3694 0.19 -1.9
3,857,983 - Psest_3694 0.19 +0.4
3,858,247 + Psest_3694 0.47 -1.4
3,858,247 + Psest_3694 0.47 -1.3
3,858,247 + Psest_3694 0.47 +0.5
3,858,248 - Psest_3694 0.48 +0.3
3,858,248 - Psest_3694 0.48 +0.9
3,858,248 - Psest_3694 0.48 -0.1
3,858,248 - Psest_3694 0.48 +0.9
3,858,265 + Psest_3694 0.49 +0.1
3,858,706 - +0.9
3,858,852 - +0.9
3,858,904 + Psest_3695 0.11 +0.4
3,858,904 + Psest_3695 0.11 -0.1
3,858,904 + -0.1
3,858,904 + Psest_3695 0.11 +0.2
3,858,904 + Psest_3695 0.11 +0.8
3,858,904 + Psest_3695 0.11 +0.5
3,858,904 + Psest_3695 0.11 +1.2
3,858,904 + Psest_3695 0.11 +0.9
3,858,904 + Psest_3695 0.11 -1.4
3,858,904 + Psest_3695 0.11 +0.5
3,858,904 + Psest_3695 0.11 -0.6
3,858,904 + Psest_3695 0.11 -0.6
3,858,904 + Psest_3695 0.11 -0.4
3,858,904 + Psest_3695 0.11 +0.2
3,858,904 + Psest_3695 0.11 -0.1
3,858,904 + Psest_3695 0.11 +1.4
3,858,904 + Psest_3695 0.11 -0.4
3,858,904 + Psest_3695 0.11 +2.9
3,858,904 + Psest_3695 0.11 -0.1
3,858,904 + Psest_3695 0.11 +0.9
3,858,904 + Psest_3695 0.11 +0.8
3,858,905 - Psest_3695 0.11 +0.5
3,858,905 - Psest_3695 0.11 +0.5
3,858,905 - Psest_3695 0.11 +3.5
3,858,905 - Psest_3695 0.11 +0.4
3,858,905 - Psest_3695 0.11 +0.4
3,858,905 - Psest_3695 0.11 +0.0
3,858,905 - Psest_3695 0.11 +1.9
3,858,905 - Psest_3695 0.11 +0.4
3,858,905 - Psest_3695 0.11 +0.0
3,858,905 - Psest_3695 0.11 +1.7
3,858,905 - Psest_3695 0.11 +0.9
3,858,905 - Psest_3695 0.11 +2.5
3,858,905 - Psest_3695 0.11 +0.5
3,858,905 - Psest_3695 0.11 +0.9
3,858,905 - Psest_3695 0.11 +0.8
3,858,905 - Psest_3695 0.11 +0.1
3,858,905 - Psest_3695 0.11 +0.2
3,858,905 - Psest_3695 0.11 +0.9
3,858,905 - Psest_3695 0.11 -0.1
3,858,905 - Psest_3695 0.11 +3.5
3,859,198 + Psest_3695 0.30 +1.3
3,859,198 + Psest_3695 0.30 +0.3
3,859,199 - Psest_3695 0.30 -1.2
3,859,199 - Psest_3695 0.30 +0.4
3,859,199 - Psest_3695 0.30 -0.1
3,859,199 - Psest_3695 0.30 +1.9
3,859,199 - Psest_3695 0.30 +1.9
3,859,199 - Psest_3695 0.30 -0.4
3,859,199 - Psest_3695 0.30 +0.5
3,859,281 - Psest_3695 0.36 -0.4
3,859,385 - Psest_3695 0.42 +1.7
3,859,724 - Psest_3695 0.64 -0.1
3,859,724 - Psest_3695 0.64 +0.9
3,859,826 - Psest_3695 0.71 -0.1
3,860,266 + -0.6
3,860,278 - +0.6
3,860,278 - +0.9
3,860,352 - Psest_3696 0.21 +1.9
3,860,352 - Psest_3696 0.21 +0.4
3,860,360 + Psest_3696 0.23 -0.1
3,860,360 + Psest_3696 0.23 -0.4
3,860,360 + Psest_3696 0.23 -0.6
3,860,360 + Psest_3696 0.23 -0.5
3,860,361 - Psest_3696 0.23 -0.1
3,860,361 - Psest_3696 0.23 +0.9
3,860,361 - Psest_3696 0.23 +0.6
3,860,408 + Psest_3696 0.35 +0.2
3,860,408 + Psest_3696 0.35 +0.2
3,860,408 + Psest_3696 0.35 +1.3
3,860,408 + Psest_3696 0.35 -1.9
3,860,408 + Psest_3696 0.35 +0.9
3,860,409 - Psest_3696 0.35 +0.7
3,860,409 - Psest_3696 0.35 -0.4
3,860,409 - Psest_3696 0.35 +0.1
3,860,409 - Psest_3696 0.35 +0.9
3,860,454 + Psest_3696 0.45 +1.2
3,860,454 + Psest_3696 0.45 +1.6
3,860,455 - Psest_3696 0.46 +0.9
3,860,455 - Psest_3696 0.46 -0.3
3,860,455 - Psest_3696 0.46 +1.9
3,860,455 - Psest_3696 0.46 +1.5
3,860,455 - Psest_3696 0.46 -1.5
3,860,455 - Psest_3696 0.46 -0.1
3,860,465 + Psest_3696 0.48 -0.1
3,860,465 + Psest_3696 0.48 -2.8
3,860,465 + Psest_3696 0.48 -1.4
3,860,466 - Psest_3696 0.48 +1.9
3,860,466 - Psest_3696 0.48 +0.9
3,860,466 - Psest_3696 0.48 -0.6
3,860,466 - Psest_3696 0.48 +0.9
3,860,503 - Psest_3696 0.57 -0.6
3,860,546 + Psest_3696 0.67 +0.9
3,860,547 - Psest_3696 0.67 +1.5
3,860,547 - Psest_3696 0.67 +0.6
3,860,547 - Psest_3696 0.67 -0.1
3,860,547 - Psest_3696 0.67 +1.5
3,860,547 - Psest_3696 0.67 +0.2
3,860,805 - Psest_3697 0.20 +1.7
3,861,198 - Psest_3697 0.84 +2.9
3,861,198 - Psest_3697 0.84 -0.6

Or see this region's nucleotide sequence