Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0252

Experiment: Def Tetracycline 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0251 and Psest_0252 are separated by 35 nucleotidesPsest_0252 and Psest_0253 overlap by 11 nucleotides Psest_0251: Psest_0251 - hypothetical protein, at 263,451 to 266,453 _0251 Psest_0252: Psest_0252 - hypothetical protein, at 266,489 to 267,283 _0252 Psest_0253: Psest_0253 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 267,273 to 268,259 _0253 Position (kb) 266 267 268Strain fitness (log2 ratio) -2 -1 0 1 2at 265.500 kb on + strand, within Psest_0251at 265.500 kb on + strand, within Psest_0251at 265.501 kb on - strand, within Psest_0251at 265.563 kb on - strand, within Psest_0251at 265.795 kb on + strand, within Psest_0251at 265.795 kb on + strand, within Psest_0251at 265.795 kb on + strand, within Psest_0251at 265.796 kb on - strand, within Psest_0251at 265.796 kb on - strand, within Psest_0251at 265.796 kb on - strand, within Psest_0251at 265.894 kb on - strand, within Psest_0251at 265.955 kb on - strand, within Psest_0251at 265.965 kb on + strand, within Psest_0251at 265.965 kb on + strand, within Psest_0251at 265.965 kb on + strand, within Psest_0251at 265.965 kb on + strand, within Psest_0251at 265.965 kb on + strand, within Psest_0251at 265.965 kb on + strand, within Psest_0251at 265.965 kb on + strand, within Psest_0251at 265.965 kb on + strand, within Psest_0251at 265.965 kb on + strand, within Psest_0251at 265.965 kb on + strand, within Psest_0251at 265.966 kb on - strand, within Psest_0251at 265.966 kb on - strand, within Psest_0251at 265.966 kb on - strand, within Psest_0251at 265.966 kb on - strand, within Psest_0251at 265.966 kb on - strand, within Psest_0251at 265.967 kb on + strand, within Psest_0251at 265.967 kb on + strand, within Psest_0251at 265.967 kb on + strand, within Psest_0251at 265.967 kb on + strand, within Psest_0251at 265.967 kb on + strand, within Psest_0251at 265.967 kb on + strand, within Psest_0251at 265.967 kb on + strand, within Psest_0251at 265.967 kb on + strand, within Psest_0251at 265.968 kb on - strand, within Psest_0251at 265.968 kb on - strand, within Psest_0251at 265.968 kb on - strand, within Psest_0251at 265.968 kb on - strand, within Psest_0251at 265.968 kb on - strand, within Psest_0251at 266.136 kb on + strand, within Psest_0251at 266.136 kb on + strand, within Psest_0251at 266.136 kb on + strand, within Psest_0251at 266.137 kb on - strand, within Psest_0251at 266.137 kb on - strand, within Psest_0251at 266.137 kb on - strand, within Psest_0251at 266.182 kb on + strandat 266.363 kb on + strandat 266.379 kb on + strandat 266.379 kb on + strandat 266.380 kb on - strandat 266.380 kb on - strandat 266.380 kb on - strandat 266.404 kb on + strandat 266.404 kb on + strandat 266.404 kb on + strandat 266.404 kb on + strandat 266.404 kb on + strandat 266.404 kb on + strandat 266.404 kb on + strandat 266.405 kb on - strandat 266.405 kb on - strandat 266.405 kb on - strandat 266.406 kb on + strandat 266.406 kb on + strandat 266.406 kb on + strandat 266.406 kb on + strandat 266.407 kb on - strandat 266.488 kb on - strandat 266.488 kb on - strandat 266.720 kb on + strand, within Psest_0252at 266.805 kb on + strand, within Psest_0252at 266.806 kb on - strand, within Psest_0252at 266.817 kb on + strand, within Psest_0252at 266.817 kb on + strand, within Psest_0252at 266.817 kb on + strand, within Psest_0252at 266.817 kb on + strand, within Psest_0252at 266.823 kb on + strand, within Psest_0252at 266.823 kb on + strand, within Psest_0252at 266.823 kb on + strand, within Psest_0252at 266.824 kb on - strand, within Psest_0252at 266.824 kb on - strand, within Psest_0252at 266.824 kb on - strand, within Psest_0252at 266.852 kb on + strand, within Psest_0252at 266.852 kb on + strand, within Psest_0252at 266.910 kb on + strand, within Psest_0252at 266.911 kb on - strand, within Psest_0252at 266.922 kb on + strand, within Psest_0252at 266.922 kb on + strand, within Psest_0252at 266.922 kb on + strand, within Psest_0252at 266.922 kb on + strand, within Psest_0252at 266.923 kb on - strand, within Psest_0252at 266.923 kb on - strand, within Psest_0252at 266.923 kb on - strand, within Psest_0252at 266.923 kb on - strand, within Psest_0252at 266.955 kb on + strand, within Psest_0252at 266.955 kb on + strand, within Psest_0252at 266.955 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.961 kb on + strand, within Psest_0252at 266.962 kb on - strand, within Psest_0252at 266.962 kb on - strand, within Psest_0252at 266.962 kb on - strand, within Psest_0252at 266.962 kb on - strand, within Psest_0252at 266.969 kb on + strand, within Psest_0252at 266.969 kb on + strand, within Psest_0252at 266.969 kb on + strand, within Psest_0252at 266.969 kb on + strand, within Psest_0252at 266.969 kb on + strand, within Psest_0252at 266.969 kb on + strand, within Psest_0252at 266.969 kb on + strand, within Psest_0252at 266.969 kb on + strand, within Psest_0252at 266.969 kb on + strand, within Psest_0252at 266.969 kb on + strand, within Psest_0252at 266.970 kb on - strand, within Psest_0252at 266.970 kb on - strand, within Psest_0252at 266.970 kb on - strand, within Psest_0252at 266.970 kb on - strand, within Psest_0252at 266.970 kb on - strand, within Psest_0252at 266.970 kb on - strand, within Psest_0252at 266.970 kb on - strand, within Psest_0252at 266.970 kb on - strand, within Psest_0252at 266.970 kb on - strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.971 kb on + strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 266.972 kb on - strand, within Psest_0252at 267.134 kb on - strand, within Psest_0252at 267.154 kb on + strand, within Psest_0252at 267.175 kb on + strand, within Psest_0252at 267.176 kb on - strand, within Psest_0252at 267.242 kb on + strandat 267.242 kb on + strandat 267.242 kb on + strandat 267.242 kb on + strandat 267.243 kb on - strandat 267.243 kb on - strandat 267.244 kb on + strandat 267.244 kb on + strandat 267.244 kb on + strandat 267.244 kb on + strandat 267.244 kb on + strandat 267.245 kb on - strandat 267.245 kb on - strandat 267.282 kb on - strandat 267.319 kb on + strandat 267.319 kb on + strandat 267.320 kb on - strandat 267.320 kb on - strandat 267.320 kb on - strandat 267.320 kb on - strandat 267.323 kb on - strandat 267.435 kb on + strand, within Psest_0253at 267.493 kb on + strand, within Psest_0253at 267.494 kb on - strand, within Psest_0253at 267.494 kb on - strand, within Psest_0253at 267.494 kb on - strand, within Psest_0253at 267.494 kb on - strand, within Psest_0253at 267.520 kb on + strand, within Psest_0253at 267.520 kb on + strand, within Psest_0253at 267.538 kb on + strand, within Psest_0253at 267.584 kb on + strand, within Psest_0253at 267.584 kb on + strand, within Psest_0253at 267.585 kb on - strand, within Psest_0253at 267.585 kb on - strand, within Psest_0253at 267.585 kb on - strand, within Psest_0253at 267.676 kb on + strand, within Psest_0253at 267.676 kb on + strand, within Psest_0253at 267.677 kb on - strand, within Psest_0253at 267.677 kb on - strand, within Psest_0253at 267.677 kb on - strand, within Psest_0253at 267.677 kb on - strand, within Psest_0253at 267.677 kb on - strand, within Psest_0253at 267.709 kb on + strand, within Psest_0253at 267.709 kb on + strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.710 kb on - strand, within Psest_0253at 267.820 kb on + strand, within Psest_0253at 267.820 kb on + strand, within Psest_0253at 267.821 kb on - strand, within Psest_0253at 267.821 kb on - strand, within Psest_0253at 267.831 kb on + strand, within Psest_0253at 267.831 kb on + strand, within Psest_0253at 267.831 kb on + strand, within Psest_0253at 267.831 kb on + strand, within Psest_0253at 267.831 kb on + strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.832 kb on - strand, within Psest_0253at 267.843 kb on + strand, within Psest_0253at 267.862 kb on + strand, within Psest_0253at 267.862 kb on + strand, within Psest_0253at 267.863 kb on - strand, within Psest_0253at 268.040 kb on - strand, within Psest_0253at 268.040 kb on - strand, within Psest_0253at 268.040 kb on - strand, within Psest_0253at 268.204 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Tetracycline 0.0004 mg/ml
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265,500 + Psest_0251 0.68 -0.0
265,500 + Psest_0251 0.68 -0.7
265,501 - Psest_0251 0.68 +0.4
265,563 - Psest_0251 0.70 +0.2
265,795 + Psest_0251 0.78 -0.1
265,795 + Psest_0251 0.78 -0.2
265,795 + Psest_0251 0.78 +0.6
265,796 - Psest_0251 0.78 -0.6
265,796 - Psest_0251 0.78 +1.0
265,796 - Psest_0251 0.78 -1.5
265,894 - Psest_0251 0.81 +0.5
265,955 - Psest_0251 0.83 -0.9
265,965 + Psest_0251 0.84 -0.0
265,965 + Psest_0251 0.84 -0.1
265,965 + Psest_0251 0.84 +0.7
265,965 + Psest_0251 0.84 -1.0
265,965 + Psest_0251 0.84 +1.1
265,965 + Psest_0251 0.84 +0.1
265,965 + Psest_0251 0.84 +0.8
265,965 + Psest_0251 0.84 +0.3
265,965 + Psest_0251 0.84 -0.2
265,965 + Psest_0251 0.84 +0.2
265,966 - Psest_0251 0.84 -0.5
265,966 - Psest_0251 0.84 +0.6
265,966 - Psest_0251 0.84 +0.7
265,966 - Psest_0251 0.84 -0.3
265,966 - Psest_0251 0.84 +0.4
265,967 + Psest_0251 0.84 -0.8
265,967 + Psest_0251 0.84 +2.0
265,967 + Psest_0251 0.84 +0.1
265,967 + Psest_0251 0.84 +0.3
265,967 + Psest_0251 0.84 -1.6
265,967 + Psest_0251 0.84 -0.4
265,967 + Psest_0251 0.84 -0.8
265,967 + Psest_0251 0.84 -0.0
265,968 - Psest_0251 0.84 -0.3
265,968 - Psest_0251 0.84 -0.6
265,968 - Psest_0251 0.84 -0.2
265,968 - Psest_0251 0.84 -0.1
265,968 - Psest_0251 0.84 -1.0
266,136 + Psest_0251 0.89 -0.3
266,136 + Psest_0251 0.89 -0.2
266,136 + Psest_0251 0.89 -0.8
266,137 - Psest_0251 0.89 +0.3
266,137 - Psest_0251 0.89 -1.1
266,137 - Psest_0251 0.89 +1.3
266,182 + +0.5
266,363 + -0.4
266,379 + +0.3
266,379 + -0.9
266,380 - -0.6
266,380 - +0.2
266,380 - -0.5
266,404 + +0.5
266,404 + +2.2
266,404 + +0.3
266,404 + -1.9
266,404 + +0.4
266,404 + +0.0
266,404 + +0.6
266,405 - +0.3
266,405 - -0.8
266,405 - +0.2
266,406 + +0.8
266,406 + +0.0
266,406 + -0.6
266,406 + +0.1
266,407 - -0.0
266,488 - -1.0
266,488 - +0.3
266,720 + Psest_0252 0.29 -0.2
266,805 + Psest_0252 0.40 -0.6
266,806 - Psest_0252 0.40 +0.1
266,817 + Psest_0252 0.41 -1.0
266,817 + Psest_0252 0.41 +0.6
266,817 + Psest_0252 0.41 +0.2
266,817 + Psest_0252 0.41 -2.0
266,823 + Psest_0252 0.42 +0.3
266,823 + Psest_0252 0.42 -0.5
266,823 + Psest_0252 0.42 -0.7
266,824 - Psest_0252 0.42 -0.6
266,824 - Psest_0252 0.42 -2.0
266,824 - Psest_0252 0.42 -0.7
266,852 + Psest_0252 0.46 -0.0
266,852 + Psest_0252 0.46 -0.7
266,910 + Psest_0252 0.53 -0.5
266,911 - Psest_0252 0.53 -0.2
266,922 + Psest_0252 0.54 -0.7
266,922 + Psest_0252 0.54 -0.2
266,922 + Psest_0252 0.54 +0.4
266,922 + Psest_0252 0.54 -1.0
266,923 - Psest_0252 0.55 +0.3
266,923 - Psest_0252 0.55 +0.4
266,923 - Psest_0252 0.55 -0.5
266,923 - Psest_0252 0.55 -1.1
266,955 + Psest_0252 0.59 -2.2
266,955 + Psest_0252 0.59 +0.5
266,955 + Psest_0252 0.59 +0.1
266,961 + Psest_0252 0.59 -2.7
266,961 + Psest_0252 0.59 -1.3
266,961 + Psest_0252 0.59 -1.0
266,961 + Psest_0252 0.59 -1.7
266,961 + Psest_0252 0.59 -0.7
266,961 + Psest_0252 0.59 -0.7
266,961 + Psest_0252 0.59 +0.2
266,961 + Psest_0252 0.59 -0.3
266,961 + Psest_0252 0.59 -0.4
266,961 + Psest_0252 0.59 -1.6
266,961 + Psest_0252 0.59 +1.0
266,962 - Psest_0252 0.59 +0.4
266,962 - Psest_0252 0.59 +0.5
266,962 - Psest_0252 0.59 -2.3
266,962 - Psest_0252 0.59 -0.7
266,969 + Psest_0252 0.60 +0.2
266,969 + Psest_0252 0.60 -0.1
266,969 + Psest_0252 0.60 -0.8
266,969 + Psest_0252 0.60 -0.3
266,969 + Psest_0252 0.60 -0.3
266,969 + Psest_0252 0.60 -2.3
266,969 + Psest_0252 0.60 -0.3
266,969 + Psest_0252 0.60 +0.1
266,969 + Psest_0252 0.60 -0.5
266,969 + Psest_0252 0.60 -0.5
266,970 - Psest_0252 0.61 -0.0
266,970 - Psest_0252 0.61 -0.9
266,970 - Psest_0252 0.61 +0.1
266,970 - Psest_0252 0.61 +0.3
266,970 - Psest_0252 0.61 +0.8
266,970 - Psest_0252 0.61 -2.5
266,970 - Psest_0252 0.61 -0.2
266,970 - Psest_0252 0.61 +1.0
266,970 - Psest_0252 0.61 +0.1
266,971 + Psest_0252 0.61 -0.4
266,971 + Psest_0252 0.61 -1.2
266,971 + Psest_0252 0.61 -0.0
266,971 + Psest_0252 0.61 -0.1
266,971 + Psest_0252 0.61 -0.5
266,971 + Psest_0252 0.61 -0.5
266,971 + Psest_0252 0.61 -0.0
266,971 + Psest_0252 0.61 -2.6
266,971 + Psest_0252 0.61 +0.6
266,971 + Psest_0252 0.61 +0.6
266,971 + Psest_0252 0.61 +0.3
266,971 + Psest_0252 0.61 -0.0
266,971 + Psest_0252 0.61 +0.3
266,972 - Psest_0252 0.61 -0.3
266,972 - Psest_0252 0.61 -0.3
266,972 - Psest_0252 0.61 -0.8
266,972 - Psest_0252 0.61 -2.0
266,972 - Psest_0252 0.61 +0.5
266,972 - Psest_0252 0.61 -0.3
266,972 - Psest_0252 0.61 +0.7
266,972 - Psest_0252 0.61 -1.6
266,972 - Psest_0252 0.61 -0.7
266,972 - Psest_0252 0.61 -0.0
266,972 - Psest_0252 0.61 -0.2
266,972 - Psest_0252 0.61 -0.3
266,972 - Psest_0252 0.61 -0.5
266,972 - Psest_0252 0.61 -0.4
266,972 - Psest_0252 0.61 -1.0
266,972 - Psest_0252 0.61 -0.4
266,972 - Psest_0252 0.61 -1.4
266,972 - Psest_0252 0.61 -0.0
266,972 - Psest_0252 0.61 -1.0
267,134 - Psest_0252 0.81 -0.3
267,154 + Psest_0252 0.84 -0.7
267,175 + Psest_0252 0.86 -1.3
267,176 - Psest_0252 0.86 +0.6
267,242 + +0.5
267,242 + -1.0
267,242 + -0.7
267,242 + +0.7
267,243 - +0.3
267,243 - -0.0
267,244 + -0.4
267,244 + -0.6
267,244 + -0.8
267,244 + -0.4
267,244 + -0.3
267,245 - -0.0
267,245 - +0.1
267,282 - -0.1
267,319 + -0.9
267,319 + +0.4
267,320 - -0.2
267,320 - -0.3
267,320 - -0.3
267,320 - +0.8
267,323 - +0.6
267,435 + Psest_0253 0.16 -0.6
267,493 + Psest_0253 0.22 -0.2
267,494 - Psest_0253 0.22 +0.7
267,494 - Psest_0253 0.22 -0.5
267,494 - Psest_0253 0.22 +0.2
267,494 - Psest_0253 0.22 -0.2
267,520 + Psest_0253 0.25 +0.3
267,520 + Psest_0253 0.25 -0.0
267,538 + Psest_0253 0.27 -0.7
267,584 + Psest_0253 0.32 -0.1
267,584 + Psest_0253 0.32 +0.4
267,585 - Psest_0253 0.32 +0.4
267,585 - Psest_0253 0.32 -0.3
267,585 - Psest_0253 0.32 -0.2
267,676 + Psest_0253 0.41 -0.9
267,676 + Psest_0253 0.41 +0.1
267,677 - Psest_0253 0.41 +1.0
267,677 - Psest_0253 0.41 -0.3
267,677 - Psest_0253 0.41 -0.8
267,677 - Psest_0253 0.41 +2.0
267,677 - Psest_0253 0.41 -2.0
267,709 + Psest_0253 0.44 +1.2
267,709 + Psest_0253 0.44 -0.0
267,710 - Psest_0253 0.44 +0.6
267,710 - Psest_0253 0.44 +0.3
267,710 - Psest_0253 0.44 -0.2
267,710 - Psest_0253 0.44 -0.6
267,710 - Psest_0253 0.44 -1.0
267,710 - Psest_0253 0.44 -0.6
267,820 + Psest_0253 0.55 -1.2
267,820 + Psest_0253 0.55 -0.5
267,821 - Psest_0253 0.56 -1.2
267,821 - Psest_0253 0.56 -0.4
267,831 + Psest_0253 0.57 -0.0
267,831 + Psest_0253 0.57 -0.5
267,831 + Psest_0253 0.57 -0.6
267,831 + Psest_0253 0.57 +0.3
267,831 + Psest_0253 0.57 +1.7
267,832 - Psest_0253 0.57 +1.3
267,832 - Psest_0253 0.57 +0.5
267,832 - Psest_0253 0.57 +1.0
267,832 - Psest_0253 0.57 -0.2
267,832 - Psest_0253 0.57 -0.7
267,832 - Psest_0253 0.57 -0.4
267,832 - Psest_0253 0.57 -0.6
267,843 + Psest_0253 0.58 -0.2
267,862 + Psest_0253 0.60 +0.4
267,862 + Psest_0253 0.60 -0.4
267,863 - Psest_0253 0.60 +0.9
268,040 - Psest_0253 0.78 +0.1
268,040 - Psest_0253 0.78 -1.8
268,040 - Psest_0253 0.78 -0.3
268,204 - -1.6

Or see this region's nucleotide sequence