Experiment: Def Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1671 and Psest_1672 are separated by 71 nucleotides Psest_1672 and Psest_1673 overlap by 4 nucleotides Psest_1673 and Psest_1674 overlap by 1 nucleotides
Psest_1671: Psest_1671 - DNA internalization-related competence protein ComEC/Rec2, at 1,779,258 to 1,781,483
_1671
Psest_1672: Psest_1672 - Biopolymer transport proteins, at 1,781,555 to 1,782,187
_1672
Psest_1673: Psest_1673 - Biopolymer transport protein, at 1,782,184 to 1,782,612
_1673
Psest_1674: Psest_1674 - tetraacyldisaccharide 4'-kinase, at 1,782,612 to 1,783,616
_1674
Position (kb)
1781
1782
1783 Strain fitness (log2 ratio)
-1
0
1
2 at 1781.102 kb on + strand, within Psest_1671 at 1781.103 kb on - strand, within Psest_1671 at 1781.167 kb on + strand, within Psest_1671 at 1781.168 kb on - strand, within Psest_1671 at 1781.168 kb on - strand, within Psest_1671 at 1781.294 kb on + strand at 1781.295 kb on - strand at 1781.313 kb on - strand at 1781.385 kb on + strand at 1781.385 kb on + strand at 1781.514 kb on + strand at 1781.514 kb on + strand at 1781.514 kb on + strand at 1781.514 kb on + strand at 1781.519 kb on + strand at 1781.519 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Tetracycline 0.0004 mg/ml remove 1,781,102 + Psest_1671 0.83 +0.2 1,781,103 - Psest_1671 0.83 +1.9 1,781,167 + Psest_1671 0.86 -0.4 1,781,168 - Psest_1671 0.86 -0.3 1,781,168 - Psest_1671 0.86 +2.5 1,781,294 + +0.1 1,781,295 - +0.1 1,781,313 - -0.3 1,781,385 + -0.3 1,781,385 + -0.4 1,781,514 + -0.2 1,781,514 + +0.3 1,781,514 + +0.4 1,781,514 + +0.7 1,781,519 + +1.3 1,781,519 + -0.8
Or see this region's nucleotide sequence