Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0103

Experiment: Def Tetracycline 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0102 and Psest_0103 overlap by 1 nucleotidesPsest_0103 and Psest_0104 are separated by 2 nucleotidesPsest_0104 and Psest_0105 overlap by 8 nucleotides Psest_0102: Psest_0102 - malonate decarboxylase, alpha subunit, at 101,350 to 103,017 _0102 Psest_0103: Psest_0103 - triphosphoribosyl-dephospho-CoA synthase MdcB, at 103,017 to 103,895 _0103 Psest_0104: Psest_0104 - malonate decarboxylase acyl carrier protein, at 103,898 to 104,197 _0104 Psest_0105: Psest_0105 - malonate decarboxylase, beta subunit, at 104,190 to 105,056 _0105 Position (kb) 103 104Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 102.085 kb on + strand, within Psest_0102at 102.085 kb on + strand, within Psest_0102at 102.085 kb on + strand, within Psest_0102at 102.085 kb on + strand, within Psest_0102at 102.085 kb on + strand, within Psest_0102at 102.086 kb on - strand, within Psest_0102at 102.086 kb on - strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.301 kb on + strand, within Psest_0102at 102.302 kb on - strand, within Psest_0102at 102.302 kb on - strand, within Psest_0102at 102.302 kb on - strand, within Psest_0102at 102.302 kb on - strand, within Psest_0102at 102.302 kb on - strand, within Psest_0102at 102.302 kb on - strand, within Psest_0102at 102.302 kb on - strand, within Psest_0102at 102.302 kb on - strand, within Psest_0102at 102.302 kb on - strand, within Psest_0102at 102.302 kb on - strand, within Psest_0102at 102.388 kb on + strand, within Psest_0102at 102.388 kb on + strand, within Psest_0102at 102.389 kb on - strand, within Psest_0102at 102.715 kb on + strand, within Psest_0102at 102.715 kb on + strand, within Psest_0102at 102.715 kb on + strand, within Psest_0102at 102.716 kb on - strand, within Psest_0102at 102.716 kb on - strand, within Psest_0102at 102.760 kb on + strand, within Psest_0102at 102.761 kb on - strand, within Psest_0102at 102.766 kb on + strand, within Psest_0102at 102.766 kb on + strand, within Psest_0102at 102.766 kb on + strand, within Psest_0102at 102.766 kb on + strand, within Psest_0102at 102.766 kb on + strand, within Psest_0102at 102.767 kb on - strand, within Psest_0102at 102.767 kb on - strand, within Psest_0102at 102.767 kb on - strand, within Psest_0102at 102.767 kb on - strand, within Psest_0102at 102.767 kb on - strand, within Psest_0102at 102.767 kb on - strand, within Psest_0102at 102.767 kb on - strand, within Psest_0102at 102.767 kb on - strand, within Psest_0102at 102.985 kb on + strandat 102.985 kb on + strandat 102.985 kb on + strandat 102.985 kb on + strandat 102.985 kb on + strandat 102.985 kb on + strandat 102.986 kb on - strandat 102.986 kb on - strandat 102.986 kb on - strandat 103.327 kb on + strand, within Psest_0103at 103.327 kb on + strand, within Psest_0103at 103.328 kb on - strand, within Psest_0103at 103.328 kb on - strand, within Psest_0103at 103.466 kb on + strand, within Psest_0103at 103.466 kb on + strand, within Psest_0103at 104.640 kb on + strand, within Psest_0105at 104.640 kb on + strand, within Psest_0105at 104.718 kb on + strand, within Psest_0105at 104.719 kb on - strand, within Psest_0105at 104.719 kb on - strand, within Psest_0105at 104.797 kb on - strand, within Psest_0105at 104.874 kb on + strand, within Psest_0105at 104.874 kb on + strand, within Psest_0105at 104.874 kb on + strand, within Psest_0105at 104.874 kb on + strand, within Psest_0105at 104.874 kb on + strand, within Psest_0105at 104.874 kb on + strand, within Psest_0105at 104.874 kb on + strand, within Psest_0105at 104.874 kb on + strand, within Psest_0105at 104.875 kb on - strand, within Psest_0105at 104.875 kb on - strand, within Psest_0105at 104.875 kb on - strand, within Psest_0105

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Tetracycline 0.0004 mg/ml
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102,085 + Psest_0102 0.44 -0.0
102,085 + Psest_0102 0.44 +2.0
102,085 + Psest_0102 0.44 +0.7
102,085 + Psest_0102 0.44 +0.4
102,085 + Psest_0102 0.44 +1.0
102,086 - Psest_0102 0.44 +0.8
102,086 - Psest_0102 0.44 +1.0
102,301 + Psest_0102 0.57 +0.4
102,301 + Psest_0102 0.57 +1.0
102,301 + Psest_0102 0.57 +2.0
102,301 + Psest_0102 0.57 +2.0
102,301 + Psest_0102 0.57 -0.6
102,301 + Psest_0102 0.57 -1.2
102,301 + Psest_0102 0.57 +0.4
102,301 + Psest_0102 0.57 +2.6
102,301 + Psest_0102 0.57 -0.9
102,301 + Psest_0102 0.57 -0.0
102,301 + Psest_0102 0.57 +0.4
102,301 + Psest_0102 0.57 +0.3
102,301 + Psest_0102 0.57 -1.0
102,301 + Psest_0102 0.57 +2.0
102,301 + Psest_0102 0.57 +1.1
102,301 + Psest_0102 0.57 +1.0
102,302 - Psest_0102 0.57 +0.6
102,302 - Psest_0102 0.57 -0.0
102,302 - Psest_0102 0.57 +1.0
102,302 - Psest_0102 0.57 +0.8
102,302 - Psest_0102 0.57 +1.0
102,302 - Psest_0102 0.57 -0.8
102,302 - Psest_0102 0.57 -0.0
102,302 - Psest_0102 0.57 -0.2
102,302 - Psest_0102 0.57 -0.3
102,302 - Psest_0102 0.57 +1.0
102,388 + Psest_0102 0.62 +0.6
102,388 + Psest_0102 0.62 -0.0
102,389 - Psest_0102 0.62 -0.0
102,715 + Psest_0102 0.82 +0.3
102,715 + Psest_0102 0.82 -1.3
102,715 + Psest_0102 0.82 -0.6
102,716 - Psest_0102 0.82 +0.3
102,716 - Psest_0102 0.82 -0.0
102,760 + Psest_0102 0.85 -0.1
102,761 - Psest_0102 0.85 +0.4
102,766 + Psest_0102 0.85 -0.6
102,766 + Psest_0102 0.85 +0.3
102,766 + Psest_0102 0.85 -0.6
102,766 + Psest_0102 0.85 +1.2
102,766 + Psest_0102 0.85 +2.0
102,767 - Psest_0102 0.85 +0.2
102,767 - Psest_0102 0.85 -0.2
102,767 - Psest_0102 0.85 -1.2
102,767 - Psest_0102 0.85 +1.6
102,767 - Psest_0102 0.85 -0.6
102,767 - Psest_0102 0.85 +1.0
102,767 - Psest_0102 0.85 -0.0
102,767 - Psest_0102 0.85 +2.3
102,985 + -0.0
102,985 + +0.6
102,985 + +0.5
102,985 + -1.3
102,985 + -1.0
102,985 + -0.0
102,986 - -0.0
102,986 - -0.6
102,986 - -0.0
103,327 + Psest_0103 0.35 -1.6
103,327 + Psest_0103 0.35 +1.0
103,328 - Psest_0103 0.35 -2.9
103,328 - Psest_0103 0.35 +0.4
103,466 + Psest_0103 0.51 -1.3
103,466 + Psest_0103 0.51 +0.6
104,640 + Psest_0105 0.52 +1.0
104,640 + Psest_0105 0.52 +1.0
104,718 + Psest_0105 0.61 +0.3
104,719 - Psest_0105 0.61 -0.6
104,719 - Psest_0105 0.61 -1.0
104,797 - Psest_0105 0.70 +0.2
104,874 + Psest_0105 0.79 -0.6
104,874 + Psest_0105 0.79 +1.0
104,874 + Psest_0105 0.79 +0.4
104,874 + Psest_0105 0.79 +1.3
104,874 + Psest_0105 0.79 +0.6
104,874 + Psest_0105 0.79 +0.5
104,874 + Psest_0105 0.79 +1.0
104,874 + Psest_0105 0.79 -0.0
104,875 - Psest_0105 0.79 +1.0
104,875 - Psest_0105 0.79 +2.6
104,875 - Psest_0105 0.79 -0.6

Or see this region's nucleotide sequence