Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0571

Experiment: Def Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0568 and Psest_0569 are separated by 21 nucleotidesPsest_0569 and Psest_0570 are separated by 174 nucleotidesPsest_0570 and Psest_0571 are separated by 160 nucleotidesPsest_0571 and Psest_0573 are separated by 544 nucleotides Psest_0568: Psest_0568 - pseudouridine synthase, at 625,010 to 625,639 _0568 Psest_0569: Psest_0569 - Protein of unknown function (DUF2788)., at 625,661 to 625,879 _0569 Psest_0570: Psest_0570 - hypothetical protein, at 626,054 to 626,446 _0570 Psest_0571: Psest_0571 - Transcriptional regulators, at 626,607 to 627,086 _0571 Psest_0573: Psest_0573 - cation diffusion facilitator family transporter, at 627,631 to 628,521 _0573 Position (kb) 626 627 628Strain fitness (log2 ratio) -2 -1 0 1 2at 625.638 kb on - strandat 625.944 kb on - strandat 625.944 kb on - strandat 625.944 kb on - strandat 625.945 kb on + strandat 625.945 kb on + strandat 625.945 kb on + strandat 625.945 kb on + strandat 625.945 kb on + strandat 625.946 kb on - strandat 625.946 kb on - strandat 625.946 kb on - strandat 625.946 kb on - strandat 625.946 kb on - strandat 626.160 kb on - strand, within Psest_0570at 626.181 kb on + strand, within Psest_0570at 626.181 kb on + strand, within Psest_0570at 626.181 kb on + strand, within Psest_0570at 626.182 kb on - strand, within Psest_0570at 626.197 kb on + strand, within Psest_0570at 626.373 kb on + strand, within Psest_0570at 626.373 kb on + strand, within Psest_0570at 626.373 kb on + strand, within Psest_0570at 626.373 kb on + strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.374 kb on - strand, within Psest_0570at 626.415 kb on + strandat 626.416 kb on - strandat 626.558 kb on + strandat 626.559 kb on - strandat 626.560 kb on + strandat 626.560 kb on + strandat 626.560 kb on + strandat 626.560 kb on + strandat 626.560 kb on + strandat 626.561 kb on - strandat 626.561 kb on - strandat 626.582 kb on + strandat 626.582 kb on + strandat 626.764 kb on + strand, within Psest_0571at 626.765 kb on - strand, within Psest_0571at 626.881 kb on + strand, within Psest_0571at 626.939 kb on + strand, within Psest_0571at 626.940 kb on - strand, within Psest_0571at 626.940 kb on - strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strandat 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.941 kb on + strand, within Psest_0571at 626.942 kb on - strand, within Psest_0571at 626.942 kb on - strand, within Psest_0571at 626.942 kb on - strand, within Psest_0571at 626.942 kb on - strand, within Psest_0571at 626.942 kb on - strand, within Psest_0571at 627.129 kb on - strandat 627.131 kb on + strandat 627.157 kb on + strandat 627.157 kb on + strandat 627.206 kb on + strandat 627.207 kb on - strandat 627.207 kb on - strandat 627.274 kb on + strandat 627.360 kb on + strandat 627.360 kb on + strandat 627.361 kb on - strandat 627.528 kb on + strandat 627.529 kb on - strandat 627.529 kb on - strandat 627.804 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.950 kb on + strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 627.951 kb on - strand, within Psest_0573at 628.055 kb on + strand, within Psest_0573

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Doxycycline hyclate 0.0006 mg/ml
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625,638 - +1.4
625,944 - +0.1
625,944 - +0.1
625,944 - -1.3
625,945 + -0.0
625,945 + -0.9
625,945 + -0.9
625,945 + -0.1
625,945 + +0.5
625,946 - -0.3
625,946 - -0.6
625,946 - -0.3
625,946 - +1.3
625,946 - +1.7
626,160 - Psest_0570 0.27 -0.9
626,181 + Psest_0570 0.32 +0.9
626,181 + Psest_0570 0.32 +1.7
626,181 + Psest_0570 0.32 -0.6
626,182 - Psest_0570 0.33 +0.4
626,197 + Psest_0570 0.36 +0.1
626,373 + Psest_0570 0.81 -1.6
626,373 + Psest_0570 0.81 +0.9
626,373 + Psest_0570 0.81 -0.3
626,373 + Psest_0570 0.81 +0.4
626,374 - Psest_0570 0.81 +1.5
626,374 - Psest_0570 0.81 -0.1
626,374 - Psest_0570 0.81 -1.2
626,374 - Psest_0570 0.81 +1.1
626,374 - Psest_0570 0.81 +1.7
626,374 - Psest_0570 0.81 -0.5
626,374 - Psest_0570 0.81 -2.0
626,415 + -0.3
626,416 - +2.2
626,558 + +0.6
626,559 - +0.4
626,560 + +0.7
626,560 + -1.4
626,560 + +0.7
626,560 + +0.9
626,560 + +2.5
626,561 - +1.7
626,561 - -0.9
626,582 + +0.5
626,582 + -0.6
626,764 + Psest_0571 0.33 +1.3
626,765 - Psest_0571 0.33 -1.4
626,881 + Psest_0571 0.57 +2.1
626,939 + Psest_0571 0.69 +0.1
626,940 - Psest_0571 0.69 -0.6
626,940 - Psest_0571 0.69 -0.1
626,941 + Psest_0571 0.70 -0.2
626,941 + Psest_0571 0.70 -0.6
626,941 + +1.7
626,941 + Psest_0571 0.70 -1.3
626,941 + Psest_0571 0.70 -0.4
626,941 + Psest_0571 0.70 +0.5
626,941 + Psest_0571 0.70 -2.3
626,941 + Psest_0571 0.70 -2.0
626,942 - Psest_0571 0.70 -0.9
626,942 - Psest_0571 0.70 -0.3
626,942 - Psest_0571 0.70 -1.1
626,942 - Psest_0571 0.70 +0.1
626,942 - Psest_0571 0.70 -0.9
627,129 - -1.1
627,131 + +0.9
627,157 + -0.7
627,157 + +0.0
627,206 + +0.9
627,207 - +0.7
627,207 - -1.0
627,274 + -0.3
627,360 + +1.0
627,360 + -1.1
627,361 - -0.7
627,528 + +1.0
627,529 - +1.1
627,529 - -0.1
627,804 + Psest_0573 0.19 -0.1
627,950 + Psest_0573 0.36 +0.7
627,950 + Psest_0573 0.36 +1.7
627,950 + Psest_0573 0.36 +0.1
627,950 + Psest_0573 0.36 +1.7
627,950 + Psest_0573 0.36 +0.3
627,950 + Psest_0573 0.36 -0.3
627,951 - Psest_0573 0.36 +0.1
627,951 - Psest_0573 0.36 +1.7
627,951 - Psest_0573 0.36 -0.6
627,951 - Psest_0573 0.36 +0.3
627,951 - Psest_0573 0.36 +0.2
627,951 - Psest_0573 0.36 +1.0
627,951 - Psest_0573 0.36 +0.3
628,055 + Psest_0573 0.48 -0.3

Or see this region's nucleotide sequence