Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4146

Experiment: Def Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4145 and Psest_4146 are separated by 8 nucleotidesPsest_4146 and Psest_4147 are separated by 12 nucleotidesPsest_4147 and Psest_4148 overlap by 1 nucleotides Psest_4145: Psest_4145 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 4,328,716 to 4,329,828 _4145 Psest_4146: Psest_4146 - Flagellar basal-body P-ring protein, at 4,329,837 to 4,330,949 _4146 Psest_4147: Psest_4147 - Flagellar basal body L-ring protein, at 4,330,962 to 4,331,630 _4147 Psest_4148: Psest_4148 - flagellar basal-body rod protein FlgG, Gram-negative bacteria, at 4,331,630 to 4,332,415 _4148 Position (kb) 4329 4330 4331Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4329.144 kb on - strand, within Psest_4145at 4329.200 kb on + strand, within Psest_4145at 4329.224 kb on + strand, within Psest_4145at 4329.224 kb on + strand, within Psest_4145at 4329.225 kb on - strand, within Psest_4145at 4329.225 kb on - strand, within Psest_4145at 4329.614 kb on + strand, within Psest_4145at 4329.614 kb on + strand, within Psest_4145at 4329.615 kb on - strand, within Psest_4145at 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.838 kb on + strandat 4329.839 kb on - strandat 4330.312 kb on + strand, within Psest_4146at 4330.312 kb on + strand, within Psest_4146at 4330.313 kb on - strand, within Psest_4146at 4330.313 kb on - strand, within Psest_4146at 4330.313 kb on - strand, within Psest_4146at 4330.534 kb on + strand, within Psest_4146at 4330.534 kb on + strand, within Psest_4146at 4330.535 kb on - strand, within Psest_4146at 4330.535 kb on - strand, within Psest_4146at 4330.645 kb on + strand, within Psest_4146at 4330.646 kb on - strand, within Psest_4146at 4330.646 kb on - strand, within Psest_4146at 4330.646 kb on - strand, within Psest_4146at 4331.089 kb on + strand, within Psest_4147at 4331.134 kb on + strand, within Psest_4147at 4331.134 kb on + strand, within Psest_4147at 4331.134 kb on + strand, within Psest_4147at 4331.135 kb on - strand, within Psest_4147at 4331.135 kb on - strand, within Psest_4147at 4331.135 kb on - strand, within Psest_4147at 4331.135 kb on - strand, within Psest_4147at 4331.135 kb on - strand, within Psest_4147at 4331.513 kb on - strand, within Psest_4147at 4331.513 kb on - strand, within Psest_4147at 4331.534 kb on - strand, within Psest_4147at 4331.534 kb on - strand, within Psest_4147at 4331.534 kb on - strand, within Psest_4147at 4331.697 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Doxycycline hyclate 0.0006 mg/ml
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4,329,144 - Psest_4145 0.38 -0.1
4,329,200 + Psest_4145 0.43 +1.3
4,329,224 + Psest_4145 0.46 +3.7
4,329,224 + Psest_4145 0.46 +1.3
4,329,225 - Psest_4145 0.46 +2.0
4,329,225 - Psest_4145 0.46 +0.7
4,329,614 + Psest_4145 0.81 -1.7
4,329,614 + Psest_4145 0.81 -1.1
4,329,615 - Psest_4145 0.81 -0.3
4,329,838 + +2.7
4,329,838 + +0.1
4,329,838 + -0.3
4,329,838 + -0.8
4,329,838 + +2.1
4,329,838 + +0.1
4,329,838 + +1.7
4,329,838 + -1.1
4,329,839 - +2.5
4,330,312 + Psest_4146 0.43 -1.6
4,330,312 + Psest_4146 0.43 -0.1
4,330,313 - Psest_4146 0.43 -0.6
4,330,313 - Psest_4146 0.43 +0.7
4,330,313 - Psest_4146 0.43 +0.7
4,330,534 + Psest_4146 0.63 -1.9
4,330,534 + Psest_4146 0.63 +0.7
4,330,535 - Psest_4146 0.63 -1.7
4,330,535 - Psest_4146 0.63 -0.9
4,330,645 + Psest_4146 0.73 -0.4
4,330,646 - Psest_4146 0.73 -0.3
4,330,646 - Psest_4146 0.73 +0.1
4,330,646 - Psest_4146 0.73 -0.3
4,331,089 + Psest_4147 0.19 +1.3
4,331,134 + Psest_4147 0.26 -0.3
4,331,134 + Psest_4147 0.26 -0.6
4,331,134 + Psest_4147 0.26 -1.1
4,331,135 - Psest_4147 0.26 +0.7
4,331,135 - Psest_4147 0.26 +0.7
4,331,135 - Psest_4147 0.26 -0.6
4,331,135 - Psest_4147 0.26 -1.1
4,331,135 - Psest_4147 0.26 +0.4
4,331,513 - Psest_4147 0.82 +1.3
4,331,513 - Psest_4147 0.82 -0.5
4,331,534 - Psest_4147 0.86 -0.6
4,331,534 - Psest_4147 0.86 +0.4
4,331,534 - Psest_4147 0.86 -0.4
4,331,697 + +2.0

Or see this region's nucleotide sequence