Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0345

Experiment: Def Doxycycline hyclate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0344 and Psest_0345 are separated by 181 nucleotidesPsest_0345 and Psest_0346 are separated by 719 nucleotidesPsest_0346 and Psest_0347 are separated by 3 nucleotides Psest_0344: Psest_0344 - Superfamily II DNA and RNA helicases, at 367,174 to 368,553 _0344 Psest_0345: Psest_0345 - Uncharacterized protein conserved in archaea, at 368,735 to 369,244 _0345 Psest_0346: Psest_0346 - small component of pyruvate/D-alanine transporter (TIGR03647) (from data), at 369,964 to 370,227 _0346 Psest_0347: Psest_0347 - large component of pyruvate/D-alanine transporter (actP-like) (from data), at 370,231 to 372,000 _0347 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2 3at 367.890 kb on - strand, within Psest_0344at 367.991 kb on + strand, within Psest_0344at 367.991 kb on + strand, within Psest_0344at 367.991 kb on + strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 368.060 kb on + strand, within Psest_0344at 368.060 kb on + strand, within Psest_0344at 368.060 kb on + strand, within Psest_0344at 368.060 kb on + strand, within Psest_0344at 368.061 kb on - strand, within Psest_0344at 368.345 kb on + strand, within Psest_0344at 368.345 kb on + strand, within Psest_0344at 368.588 kb on + strandat 368.588 kb on + strandat 368.588 kb on + strandat 368.589 kb on - strandat 368.589 kb on - strandat 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.975 kb on + strand, within Psest_0345at 368.975 kb on + strand, within Psest_0345at 368.975 kb on + strand, within Psest_0345at 368.975 kb on + strand, within Psest_0345at 368.975 kb on + strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 369.152 kb on + strand, within Psest_0345at 369.153 kb on - strand, within Psest_0345at 369.203 kb on + strandat 369.203 kb on + strandat 369.203 kb on + strandat 369.203 kb on + strandat 369.204 kb on - strandat 369.204 kb on - strandat 369.204 kb on - strandat 369.218 kb on + strandat 369.219 kb on - strandat 369.219 kb on - strandat 369.516 kb on - strandat 369.525 kb on + strandat 369.528 kb on - strandat 369.528 kb on - strandat 369.528 kb on - strandat 369.528 kb on - strandat 369.536 kb on + strandat 369.553 kb on - strandat 369.564 kb on + strandat 369.566 kb on + strandat 369.585 kb on + strandat 369.639 kb on - strandat 369.658 kb on + strandat 369.659 kb on - strandat 369.669 kb on + strandat 369.670 kb on - strandat 369.837 kb on + strandat 369.837 kb on + strandat 369.838 kb on - strandat 369.909 kb on - strandat 369.939 kb on - strandat 369.939 kb on - strandat 370.034 kb on + strand, within Psest_0346at 370.058 kb on - strand, within Psest_0346at 370.118 kb on + strand, within Psest_0346at 370.118 kb on + strand, within Psest_0346at 370.118 kb on + strand, within Psest_0346at 370.119 kb on - strand, within Psest_0346at 370.225 kb on + strandat 370.225 kb on + strandat 370.225 kb on + strandat 370.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Doxycycline hyclate 0.0006 mg/ml
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367,890 - Psest_0344 0.52 +0.4
367,991 + Psest_0344 0.59 -1.2
367,991 + Psest_0344 0.59 +0.4
367,991 + Psest_0344 0.59 -0.6
367,992 - Psest_0344 0.59 -0.6
367,992 - Psest_0344 0.59 -0.5
367,992 - Psest_0344 0.59 -0.2
367,992 - Psest_0344 0.59 -0.7
368,060 + Psest_0344 0.64 +0.4
368,060 + Psest_0344 0.64 -0.6
368,060 + Psest_0344 0.64 +0.4
368,060 + Psest_0344 0.64 +0.6
368,061 - Psest_0344 0.64 +0.4
368,345 + Psest_0344 0.85 +0.8
368,345 + Psest_0344 0.85 +1.4
368,588 + +0.6
368,588 + +0.4
368,588 + -0.0
368,589 - -0.7
368,589 - +0.3
368,973 + Psest_0345 0.47 +0.8
368,973 + Psest_0345 0.47 +1.9
368,973 + Psest_0345 0.47 +0.8
368,973 + Psest_0345 0.47 +0.3
368,973 + Psest_0345 0.47 +0.6
368,973 + Psest_0345 0.47 +1.8
368,973 + Psest_0345 0.47 +0.3
368,973 + Psest_0345 0.47 -0.6
368,973 + Psest_0345 0.47 +0.5
368,973 + Psest_0345 0.47 -0.9
368,973 + Psest_0345 0.47 -1.4
368,973 + Psest_0345 0.47 +0.5
368,973 + Psest_0345 0.47 -0.4
368,973 + Psest_0345 0.47 -0.2
368,973 + Psest_0345 0.47 +0.7
368,973 + Psest_0345 0.47 +1.5
368,973 + Psest_0345 0.47 +1.1
368,974 - Psest_0345 0.47 -0.1
368,974 - Psest_0345 0.47 -0.9
368,974 - Psest_0345 0.47 -0.3
368,974 - Psest_0345 0.47 +0.3
368,974 - Psest_0345 0.47 -1.6
368,974 - Psest_0345 0.47 +1.3
368,974 - Psest_0345 0.47 -0.5
368,974 - Psest_0345 0.47 +0.6
368,974 - Psest_0345 0.47 +0.3
368,974 - Psest_0345 0.47 -1.9
368,974 - Psest_0345 0.47 -0.6
368,974 - Psest_0345 0.47 -1.6
368,974 - Psest_0345 0.47 -1.3
368,974 - Psest_0345 0.47 +0.8
368,974 - Psest_0345 0.47 +0.1
368,974 - Psest_0345 0.47 +0.4
368,974 - Psest_0345 0.47 +0.8
368,974 - Psest_0345 0.47 -0.1
368,974 - Psest_0345 0.47 +0.7
368,974 - Psest_0345 0.47 -0.1
368,975 + Psest_0345 0.47 +0.1
368,975 + Psest_0345 0.47 -0.6
368,975 + Psest_0345 0.47 -0.1
368,975 + Psest_0345 0.47 -1.1
368,975 + Psest_0345 0.47 -0.5
368,976 - Psest_0345 0.47 -0.2
368,976 - Psest_0345 0.47 +0.6
368,976 - Psest_0345 0.47 -0.5
368,976 - Psest_0345 0.47 +0.8
368,976 - Psest_0345 0.47 +0.6
368,976 - Psest_0345 0.47 +1.5
368,976 - Psest_0345 0.47 +0.9
368,976 - Psest_0345 0.47 +0.3
368,976 - Psest_0345 0.47 -1.1
368,976 - Psest_0345 0.47 +0.4
368,976 - Psest_0345 0.47 -2.3
369,152 + Psest_0345 0.82 -0.4
369,153 - Psest_0345 0.82 +0.3
369,203 + -1.5
369,203 + -0.1
369,203 + +2.8
369,203 + -0.4
369,204 - +0.4
369,204 - +0.4
369,204 - +0.9
369,218 + +0.3
369,219 - +0.0
369,219 - +1.2
369,516 - +0.7
369,525 + -0.1
369,528 - +0.3
369,528 - -1.6
369,528 - -0.6
369,528 - -0.2
369,536 + -0.0
369,553 - -1.2
369,564 + -1.9
369,566 + +1.1
369,585 + -1.1
369,639 - +0.9
369,658 + +1.2
369,659 - -0.2
369,669 + -0.7
369,670 - -1.2
369,837 + -0.1
369,837 + -0.4
369,838 - +0.3
369,909 - +1.2
369,939 - +1.2
369,939 - +1.6
370,034 + Psest_0346 0.27 -0.6
370,058 - Psest_0346 0.36 +2.0
370,118 + Psest_0346 0.58 +0.1
370,118 + Psest_0346 0.58 -1.6
370,118 + Psest_0346 0.58 +0.8
370,119 - Psest_0346 0.59 +0.4
370,225 + -0.2
370,225 + +1.3
370,225 + -0.9
370,226 - +0.2

Or see this region's nucleotide sequence