Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1451

Experiment: Def Doxycycline hyclate 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def Doxycycline hyclate 0.0002 mg/ml
1,559,302	-				-1.2
1,559,302	-				-3.2
1,559,302	-				+1.4
1,559,302	-				+0.4
1,559,302	-				-2.5
1,559,302	-				-1.0
1,559,302	-				-0.6
1,559,401	-				+0.4
1,559,452	+				+0.3
1,559,474	+				+0.2
1,559,474	+				+0.3
1,559,474	+				-1.4
1,559,475	-				-0.5
1,559,475	-				-0.1
1,559,475	-				-0.4
1,559,476	+				+0.2
1,559,476	+				+0.1
1,559,476	+				-0.5
1,559,476	+				+1.4
1,559,476	+				+0.2
1,559,476	+				+0.8
1,559,476	+				+0.8
1,559,476	+				-1.8
1,559,476	+				+1.0
1,559,477	-				-0.2
1,559,477	-				+0.2
1,559,743	+		Psest_1451	0.49	+0.9
1,559,743	+		Psest_1451	0.49	+0.4
1,559,743	+		Psest_1451	0.49	-0.3
1,559,743	+		Psest_1451	0.49	+0.4
1,559,744	-		Psest_1451	0.50	+0.2
1,559,744	-		Psest_1451	0.50	-0.2
1,560,105	+				-3.2
1,560,105	+				-0.6
1,560,106	-				-2.6
1,560,106	-				-2.0
1,560,124	+				-2.6
1,560,128	+				-2.8
1,560,129	-				-1.6
1,560,326	+				-2.1
1,560,326	+				-0.8
1,560,326	+				-2.5
1,560,326	+				-3.9
1,560,326	+				-0.6
1,560,326	+				-4.0
1,560,327	-				-0.2
1,560,513	+		Psest_1452	0.13	-0.2
1,560,513	+		Psest_1452	0.13	-2.5
1,560,568	+		Psest_1452	0.16	-2.0
1,560,568	+		Psest_1452	0.16	-2.8
1,560,569	-		Psest_1452	0.16	-3.5
1,560,575	-		Psest_1452	0.16	-3.3
1,560,700	+		Psest_1452	0.22	-1.0
1,560,700	+		Psest_1452	0.22	-2.5
1,560,700	+		Psest_1452	0.22	-2.5
1,560,700	+		Psest_1452	0.22	-2.1
1,560,700	+		Psest_1452	0.22	-2.6
1,560,700	+		Psest_1452	0.22	-3.0
1,560,700	+		Psest_1452	0.22	-1.0
1,560,700	+		Psest_1452	0.22	-0.2
1,560,701	-		Psest_1452	0.22	-1.0
1,560,701	-		Psest_1452	0.22	-5.1
1,560,715	-		Psest_1452	0.22	-2.1
1,560,782	-		Psest_1452	0.25	-2.7
1,560,782	-		Psest_1452	0.25	+0.4
1,560,896	-		Psest_1452	0.30	-2.2
1,560,896	-		Psest_1452	0.30	-2.6
1,560,896	-		Psest_1452	0.30	-3.0
1,560,896	-		Psest_1452	0.30	-3.6
1,560,940	+		Psest_1452	0.32	-1.6
1,560,940	+		Psest_1452	0.32	-2.1
1,560,941	-		Psest_1452	0.32	-1.8
1,560,941	-		Psest_1452	0.32	+0.4
1,560,941	-		Psest_1452	0.32	-2.5
1,560,941	-		Psest_1452	0.32	-0.6