Experiment: Def Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0013 and Psest_0014 are separated by 26 nucleotides Psest_0014 and Psest_0015 are separated by 25 nucleotides Psest_0015 and Psest_0016 are separated by 146 nucleotides
Psest_0013: Psest_0013 - Lauroyl/myristoyl acyltransferase, at 15,128 to 16,015
_0013
Psest_0014: Psest_0014 - PilZ domain., at 16,042 to 16,308
_0014
Psest_0015: Psest_0015 - Tetratricopeptide repeat., at 16,334 to 16,651
_0015
Psest_0016: Psest_0016 - ectoine/hydroxyectoine ABC transporter, ATP-binding protein, at 16,798 to 17,634
_0016
Position (kb) 16
17 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 15.094 kb on + strand at 15.094 kb on + strand at 15.094 kb on + strand at 15.095 kb on - strand at 15.518 kb on + strand, within Psest_0013 at 15.518 kb on + strand, within Psest_0013 at 15.519 kb on - strand, within Psest_0013 at 15.548 kb on + strand, within Psest_0013 at 15.548 kb on + strand, within Psest_0013 at 15.549 kb on - strand, within Psest_0013 at 15.549 kb on - strand, within Psest_0013 at 15.723 kb on + strand, within Psest_0013 at 15.724 kb on - strand, within Psest_0013 at 15.724 kb on - strand, within Psest_0013 at 15.724 kb on - strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.944 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 16.041 kb on + strand at 16.042 kb on - strand at 16.042 kb on - strand at 16.156 kb on + strand, within Psest_0014 at 16.156 kb on + strand, within Psest_0014 at 16.156 kb on + strand, within Psest_0014 at 16.156 kb on + strand, within Psest_0014 at 16.157 kb on - strand, within Psest_0014 at 16.181 kb on + strand, within Psest_0014 at 16.181 kb on + strand, within Psest_0014 at 16.182 kb on - strand, within Psest_0014 at 16.506 kb on + strand, within Psest_0015 at 16.575 kb on + strand, within Psest_0015 at 16.575 kb on + strand, within Psest_0015 at 16.575 kb on + strand, within Psest_0015 at 16.576 kb on - strand, within Psest_0015 at 16.698 kb on + strand at 16.699 kb on - strand at 16.733 kb on + strand at 16.734 kb on - strand at 16.734 kb on - strand at 16.734 kb on - strand at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016
Per-strain Table
Position Strand Gene LocusTag Fraction Def Doxycycline hyclate 0.0002 mg/ml remove 15,094 + -0.0 15,094 + +0.1 15,094 + +0.2 15,095 - -0.3 15,518 + Psest_0013 0.44 -1.4 15,518 + Psest_0013 0.44 -3.4 15,519 - Psest_0013 0.44 -3.7 15,548 + Psest_0013 0.47 -2.3 15,548 + Psest_0013 0.47 +0.2 15,549 - Psest_0013 0.47 -1.7 15,549 - Psest_0013 0.47 +0.1 15,723 + Psest_0013 0.67 -3.7 15,724 - Psest_0013 0.67 -1.8 15,724 - Psest_0013 0.67 -2.1 15,724 - Psest_0013 0.67 -2.0 15,878 + Psest_0013 0.84 -2.6 15,878 + Psest_0013 0.84 -2.4 15,878 + Psest_0013 0.84 +0.6 15,878 + Psest_0013 0.84 -3.2 15,878 + Psest_0013 0.84 -0.8 15,878 + Psest_0013 0.84 -3.7 15,878 + Psest_0013 0.84 -2.0 15,878 + Psest_0013 0.84 -3.1 15,878 + Psest_0013 0.84 -2.1 15,878 + Psest_0013 0.84 -2.2 15,878 + Psest_0013 0.84 -1.0 15,879 - Psest_0013 0.85 -2.4 15,879 - Psest_0013 0.85 -0.4 15,879 - Psest_0013 0.85 -1.7 15,879 - Psest_0013 0.85 -1.6 15,879 - Psest_0013 0.85 -1.8 15,879 - Psest_0013 0.85 -2.4 15,879 - Psest_0013 0.85 -0.8 15,879 - Psest_0013 0.85 -2.0 15,932 + -3.3 15,932 + -2.6 15,932 + -2.3 15,933 - -1.0 15,933 - -2.5 15,933 - -3.3 15,933 - -1.4 15,944 + -0.0 15,956 + -0.4 15,956 + -1.4 15,956 + -1.4 15,956 + -0.4 15,956 + -2.0 15,956 + -0.8 15,956 + -1.8 15,956 + -2.5 15,956 + -4.1 15,956 + -1.0 15,956 + -3.0 15,956 + -0.4 15,956 + -1.4 15,956 + -3.3 15,956 + -1.7 15,956 + -0.4 15,956 + -0.8 15,957 - -0.8 15,957 - -1.4 15,957 - -1.2 15,957 - -0.0 15,957 - -2.2 15,957 - -1.6 15,957 - +1.6 16,041 + +0.6 16,042 - -0.0 16,042 - -0.3 16,156 + Psest_0014 0.43 -0.4 16,156 + Psest_0014 0.43 +0.8 16,156 + Psest_0014 0.43 -2.4 16,156 + Psest_0014 0.43 +0.6 16,157 - Psest_0014 0.43 -0.3 16,181 + Psest_0014 0.52 -0.8 16,181 + Psest_0014 0.52 +0.1 16,182 - Psest_0014 0.52 +0.1 16,506 + Psest_0015 0.54 -0.7 16,575 + Psest_0015 0.76 +0.4 16,575 + Psest_0015 0.76 -0.3 16,575 + Psest_0015 0.76 -0.5 16,576 - Psest_0015 0.76 -0.9 16,698 + +0.5 16,699 - -1.8 16,733 + -0.3 16,734 - +0.0 16,734 - +0.6 16,734 - +0.7 17,287 + Psest_0016 0.58 +0.1 17,287 + Psest_0016 0.58 -0.8 17,287 + Psest_0016 0.58 +1.3 17,287 + Psest_0016 0.58 +0.3 17,287 + Psest_0016 0.58 +1.1 17,287 + Psest_0016 0.58 +0.6 17,287 + Psest_0016 0.58 +0.6 17,288 - Psest_0016 0.59 -0.8 17,288 - Psest_0016 0.59 +0.6 17,288 - Psest_0016 0.59 +0.1
Or see this region's nucleotide sequence