Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0770

Experiment: Def Neomycin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0768 and Psest_0769 are separated by 135 nucleotidesPsest_0769 and Psest_0770 are separated by 47 nucleotidesPsest_0770 and Psest_0771 are separated by 118 nucleotidesPsest_0771 and Psest_0772 are separated by 339 nucleotides Psest_0768: Psest_0768 - Uncharacterized conserved protein, at 837,640 to 838,467 _0768 Psest_0769: Psest_0769 - Predicted membrane protein, at 838,603 to 839,331 _0769 Psest_0770: Psest_0770 - alkylphosphonate utilization operon protein PhnA, at 839,379 to 839,723 _0770 Psest_0771: Psest_0771 - Acyl-CoA hydrolase, at 839,842 to 840,345 _0771 Psest_0772: Psest_0772 - Cytochrome c553, at 840,685 to 841,371 _0772 Position (kb) 839 840Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 838.526 kb on + strandat 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.042 kb on - strand, within Psest_0769at 839.042 kb on - strand, within Psest_0769at 839.074 kb on + strand, within Psest_0769at 839.075 kb on - strand, within Psest_0769at 839.215 kb on + strand, within Psest_0769at 839.215 kb on + strand, within Psest_0769at 839.292 kb on + strandat 839.677 kb on + strand, within Psest_0770at 839.677 kb on + strand, within Psest_0770at 839.677 kb on + strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.683 kb on + strand, within Psest_0770at 839.684 kb on - strand, within Psest_0770at 839.684 kb on - strand, within Psest_0770at 839.765 kb on + strandat 839.765 kb on + strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.837 kb on - strandat 839.837 kb on - strandat 839.843 kb on + strandat 839.843 kb on + strandat 839.843 kb on + strandat 839.844 kb on - strandat 839.844 kb on - strandat 839.844 kb on - strandat 839.889 kb on - strandat 839.928 kb on - strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.201 kb on - strand, within Psest_0771at 840.230 kb on + strand, within Psest_0771at 840.231 kb on - strand, within Psest_0771at 840.248 kb on + strand, within Psest_0771at 840.248 kb on + strand, within Psest_0771at 840.248 kb on + strand, within Psest_0771at 840.249 kb on - strand, within Psest_0771at 840.249 kb on - strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.340 kb on + strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.341 kb on - strandat 840.379 kb on + strandat 840.379 kb on + strandat 840.380 kb on - strandat 840.380 kb on - strandat 840.380 kb on - strandat 840.384 kb on + strandat 840.385 kb on - strandat 840.385 kb on - strandat 840.487 kb on + strandat 840.509 kb on + strandat 840.509 kb on + strandat 840.509 kb on + strandat 840.510 kb on - strandat 840.510 kb on - strandat 840.631 kb on + strandat 840.631 kb on + strandat 840.631 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Neomycin 0.0008 mg/ml
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838,526 + -1.6
838,747 + Psest_0769 0.20 -1.1
838,747 + Psest_0769 0.20 +0.5
838,747 + Psest_0769 0.20 +0.7
838,747 + Psest_0769 0.20 +0.7
838,747 + Psest_0769 0.20 +0.0
838,747 + Psest_0769 0.20 -0.9
838,747 + Psest_0769 0.20 -0.5
838,747 + Psest_0769 0.20 +0.1
838,747 + Psest_0769 0.20 -1.1
838,747 + Psest_0769 0.20 -0.9
838,747 + Psest_0769 0.20 +0.6
838,747 + Psest_0769 0.20 -0.6
838,748 - Psest_0769 0.20 +1.4
838,748 - Psest_0769 0.20 -1.5
838,748 - Psest_0769 0.20 -0.1
838,748 - Psest_0769 0.20 -2.0
838,748 - Psest_0769 0.20 +0.8
838,748 - Psest_0769 0.20 +0.1
839,041 + Psest_0769 0.60 -1.1
839,041 + Psest_0769 0.60 -1.3
839,041 + Psest_0769 0.60 -0.1
839,042 - Psest_0769 0.60 +0.1
839,042 - Psest_0769 0.60 +0.4
839,074 + Psest_0769 0.65 +0.4
839,075 - Psest_0769 0.65 +1.5
839,215 + Psest_0769 0.84 -2.0
839,215 + Psest_0769 0.84 -2.0
839,292 + +3.6
839,677 + Psest_0770 0.86 -2.4
839,677 + Psest_0770 0.86 -1.2
839,677 + Psest_0770 0.86 -0.8
839,678 - Psest_0770 0.87 -2.4
839,678 - Psest_0770 0.87 -2.5
839,678 - Psest_0770 0.87 -0.1
839,678 - Psest_0770 0.87 +1.8
839,678 - Psest_0770 0.87 -1.6
839,683 + Psest_0770 0.88 +1.4
839,684 - Psest_0770 0.88 -1.0
839,684 - Psest_0770 0.88 -1.5
839,765 + -0.1
839,765 + -1.0
839,766 - -0.1
839,766 - +0.8
839,766 - -0.2
839,766 - +0.2
839,766 - -0.6
839,837 - +0.8
839,837 - +0.8
839,843 + -0.3
839,843 + -0.4
839,843 + +0.7
839,844 - +0.1
839,844 - +0.9
839,844 - -1.8
839,889 - +1.3
839,928 - Psest_0771 0.17 +1.2
840,113 + Psest_0771 0.54 +0.9
840,113 + Psest_0771 0.54 +1.7
840,113 + Psest_0771 0.54 -1.3
840,113 + Psest_0771 0.54 -2.1
840,114 - Psest_0771 0.54 +0.8
840,114 - Psest_0771 0.54 -0.8
840,114 - Psest_0771 0.54 -1.5
840,114 - Psest_0771 0.54 +0.4
840,200 + Psest_0771 0.71 -2.4
840,200 + Psest_0771 0.71 +0.7
840,200 + Psest_0771 0.71 +0.1
840,200 + Psest_0771 0.71 -0.3
840,200 + Psest_0771 0.71 -0.6
840,200 + Psest_0771 0.71 +1.3
840,200 + Psest_0771 0.71 +0.5
840,200 + Psest_0771 0.71 +1.7
840,201 - Psest_0771 0.71 -0.1
840,230 + Psest_0771 0.77 +1.7
840,231 - Psest_0771 0.77 +0.7
840,248 + Psest_0771 0.81 -2.2
840,248 + Psest_0771 0.81 +0.9
840,248 + Psest_0771 0.81 -0.1
840,249 - Psest_0771 0.81 -1.3
840,249 - Psest_0771 0.81 +0.7
840,271 + Psest_0771 0.85 -1.5
840,271 + Psest_0771 0.85 +0.0
840,271 + Psest_0771 0.85 -0.6
840,271 + Psest_0771 0.85 -1.4
840,271 + Psest_0771 0.85 -0.8
840,271 + Psest_0771 0.85 +0.4
840,271 + Psest_0771 0.85 -2.1
840,271 + Psest_0771 0.85 +0.3
840,271 + Psest_0771 0.85 +0.3
840,271 + Psest_0771 0.85 -0.1
840,271 + Psest_0771 0.85 +0.7
840,271 + Psest_0771 0.85 +0.1
840,271 + Psest_0771 0.85 -0.2
840,271 + Psest_0771 0.85 -0.9
840,272 - Psest_0771 0.85 -2.4
840,272 - Psest_0771 0.85 +0.9
840,272 - Psest_0771 0.85 -0.1
840,272 - Psest_0771 0.85 -0.3
840,272 - Psest_0771 0.85 +0.8
840,272 - Psest_0771 0.85 +0.9
840,272 - Psest_0771 0.85 +1.0
840,272 - Psest_0771 0.85 +1.6
840,272 - Psest_0771 0.85 +0.1
840,272 - Psest_0771 0.85 -0.2
840,272 - Psest_0771 0.85 +0.8
840,272 - Psest_0771 0.85 +2.1
840,272 - Psest_0771 0.85 -1.4
840,272 - Psest_0771 0.85 +1.9
840,272 - Psest_0771 0.85 -0.6
840,340 + -3.0
840,340 + -0.6
840,340 + +1.8
840,340 + -0.4
840,340 + -0.5
840,340 + +0.7
840,340 + -0.0
840,340 + +0.4
840,340 + +1.1
840,340 + -1.2
840,341 - -2.6
840,341 - -0.9
840,341 - -1.5
840,341 - +0.4
840,341 - -0.3
840,341 - +0.7
840,341 - -0.9
840,379 + +3.6
840,379 + +0.9
840,380 - +0.5
840,380 - +3.3
840,380 - -0.9
840,384 + -1.3
840,385 - +1.2
840,385 - -1.6
840,487 + -0.5
840,509 + +0.9
840,509 + +0.3
840,509 + -0.5
840,510 - -0.3
840,510 - +1.7
840,631 + +2.0
840,631 + +1.4
840,631 + +1.4

Or see this region's nucleotide sequence