Experiment: Def Neomycin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0761 and Psest_0762 overlap by 1 nucleotides Psest_0762 and Psest_0763 overlap by 4 nucleotides Psest_0763 and Psest_0764 are separated by 241 nucleotides
Psest_0761: Psest_0761 - Predicted permease, DMT superfamily, at 830,194 to 831,318
_0761
Psest_0762: Psest_0762 - Glucose/sorbosone dehydrogenases, at 831,318 to 832,616
_0762
Psest_0763: Psest_0763 - Predicted membrane protein, at 832,613 to 833,062
_0763
Psest_0764: Psest_0764 - diguanylate cyclase (GGDEF) domain, at 833,304 to 834,860
_0764
Position (kb) 831
832
833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 830.347 kb on - strand, within Psest_0761 at 830.353 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.497 kb on + strand, within Psest_0761 at 830.497 kb on + strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.522 kb on - strand, within Psest_0761 at 830.562 kb on - strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.753 kb on + strand, within Psest_0761 at 830.754 kb on - strand, within Psest_0761 at 830.754 kb on - strand, within Psest_0761 at 830.774 kb on + strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.825 kb on + strand, within Psest_0761 at 830.825 kb on + strand, within Psest_0761 at 831.034 kb on + strand, within Psest_0761 at 831.035 kb on - strand, within Psest_0761 at 831.035 kb on - strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.198 kb on + strand, within Psest_0761 at 831.508 kb on + strand, within Psest_0762 at 831.727 kb on + strand, within Psest_0762 at 831.727 kb on + strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.744 kb on - strand, within Psest_0762 at 831.878 kb on - strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.982 kb on + strand, within Psest_0762 at 832.001 kb on + strand, within Psest_0762 at 832.002 kb on - strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.130 kb on - strand, within Psest_0762 at 832.160 kb on - strand, within Psest_0762 at 832.201 kb on + strand, within Psest_0762 at 832.201 kb on + strand, within Psest_0762 at 832.202 kb on - strand, within Psest_0762 at 832.202 kb on - strand, within Psest_0762 at 832.438 kb on - strand, within Psest_0762 at 832.526 kb on - strand at 832.526 kb on - strand at 832.673 kb on + strand, within Psest_0763 at 832.750 kb on + strand, within Psest_0763 at 832.788 kb on + strand, within Psest_0763 at 832.788 kb on + strand, within Psest_0763 at 832.788 kb on + strand, within Psest_0763 at 832.789 kb on - strand, within Psest_0763 at 832.789 kb on - strand, within Psest_0763 at 832.789 kb on - strand, within Psest_0763 at 832.917 kb on + strand, within Psest_0763 at 832.917 kb on + strand, within Psest_0763 at 832.918 kb on - strand, within Psest_0763 at 832.918 kb on - strand, within Psest_0763 at 832.929 kb on + strand, within Psest_0763 at 832.930 kb on - strand, within Psest_0763 at 832.930 kb on - strand, within Psest_0763 at 833.023 kb on + strand at 833.024 kb on - strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.064 kb on + strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.065 kb on - strand at 833.068 kb on + strand at 833.068 kb on + strand at 833.144 kb on + strand at 833.145 kb on - strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.359 kb on + strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.360 kb on - strand at 833.587 kb on + strand, within Psest_0764 at 833.587 kb on + strand, within Psest_0764 at 833.587 kb on + strand, within Psest_0764 at 833.587 kb on + strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764 at 833.588 kb on - strand, within Psest_0764
Per-strain Table
Position Strand Gene LocusTag Fraction Def Neomycin 0.0008 mg/ml remove 830,347 - Psest_0761 0.14 -0.1 830,353 + Psest_0761 0.14 +1.1 830,387 + Psest_0761 0.17 -1.1 830,387 + Psest_0761 0.17 -0.2 830,388 - Psest_0761 0.17 -1.3 830,388 - Psest_0761 0.17 -0.6 830,388 - Psest_0761 0.17 -0.1 830,388 - Psest_0761 0.17 -0.3 830,388 - Psest_0761 0.17 +0.4 830,388 - Psest_0761 0.17 +0.1 830,497 + Psest_0761 0.27 +0.2 830,497 + Psest_0761 0.27 -1.2 830,498 - Psest_0761 0.27 +0.9 830,498 - Psest_0761 0.27 -0.3 830,498 - Psest_0761 0.27 -1.6 830,498 - Psest_0761 0.27 -0.3 830,498 - Psest_0761 0.27 -2.6 830,522 - Psest_0761 0.29 -1.5 830,562 - Psest_0761 0.33 -0.5 830,577 + Psest_0761 0.34 +2.3 830,577 + Psest_0761 0.34 +0.2 830,577 + Psest_0761 0.34 -0.6 830,577 + Psest_0761 0.34 -2.8 830,654 + Psest_0761 0.41 -1.1 830,654 + Psest_0761 0.41 -1.1 830,654 + Psest_0761 0.41 +0.8 830,654 + Psest_0761 0.41 -1.8 830,654 + Psest_0761 0.41 -3.0 830,654 + Psest_0761 0.41 -0.3 830,654 + Psest_0761 0.41 +0.4 830,654 + Psest_0761 0.41 +0.5 830,654 + Psest_0761 0.41 +0.7 830,654 + Psest_0761 0.41 -0.8 830,655 - Psest_0761 0.41 -1.7 830,655 - Psest_0761 0.41 -0.3 830,655 - Psest_0761 0.41 +0.1 830,655 - Psest_0761 0.41 +1.0 830,655 - Psest_0761 0.41 +2.3 830,655 - Psest_0761 0.41 -0.3 830,655 - Psest_0761 0.41 +0.7 830,655 - Psest_0761 0.41 +1.7 830,655 - Psest_0761 0.41 -1.5 830,655 - Psest_0761 0.41 -1.3 830,753 + Psest_0761 0.50 +0.1 830,754 - Psest_0761 0.50 +0.4 830,754 - Psest_0761 0.50 -0.8 830,774 + Psest_0761 0.52 -3.6 830,775 - Psest_0761 0.52 +0.6 830,775 - Psest_0761 0.52 -1.0 830,775 - Psest_0761 0.52 -0.5 830,775 - Psest_0761 0.52 +1.7 830,775 - Psest_0761 0.52 +1.2 830,775 - Psest_0761 0.52 -0.4 830,825 + Psest_0761 0.56 -0.1 830,825 + Psest_0761 0.56 -0.9 831,034 + Psest_0761 0.75 -2.7 831,035 - Psest_0761 0.75 -0.9 831,035 - Psest_0761 0.75 -0.9 831,055 + Psest_0761 0.77 +0.1 831,055 + Psest_0761 0.77 -1.5 831,055 + Psest_0761 0.77 +0.8 831,115 + Psest_0761 0.82 +0.1 831,115 + Psest_0761 0.82 +1.3 831,115 + Psest_0761 0.82 -2.9 831,115 + Psest_0761 0.82 +3.6 831,115 + Psest_0761 0.82 -1.1 831,115 + Psest_0761 0.82 -0.3 831,115 + Psest_0761 0.82 -0.6 831,115 + Psest_0761 0.82 +1.1 831,115 + Psest_0761 0.82 -1.4 831,115 + Psest_0761 0.82 -1.1 831,115 + Psest_0761 0.82 -0.3 831,115 + Psest_0761 0.82 -1.1 831,115 + Psest_0761 0.82 -0.1 831,116 - Psest_0761 0.82 +1.0 831,116 - Psest_0761 0.82 +1.6 831,116 - Psest_0761 0.82 -1.6 831,116 - Psest_0761 0.82 -1.7 831,116 - Psest_0761 0.82 +0.8 831,116 - Psest_0761 0.82 +0.1 831,116 - Psest_0761 0.82 -0.5 831,116 - Psest_0761 0.82 -0.8 831,116 - Psest_0761 0.82 -0.1 831,116 - Psest_0761 0.82 -0.1 831,116 - Psest_0761 0.82 -1.9 831,116 - Psest_0761 0.82 -1.3 831,116 - Psest_0761 0.82 +0.7 831,116 - Psest_0761 0.82 +1.6 831,118 + Psest_0761 0.82 -1.3 831,118 + Psest_0761 0.82 +2.3 831,118 + Psest_0761 0.82 +1.0 831,118 + Psest_0761 0.82 +1.7 831,118 + Psest_0761 0.82 +1.1 831,118 + Psest_0761 0.82 +2.3 831,118 + Psest_0761 0.82 -0.6 831,118 + Psest_0761 0.82 -1.9 831,118 + Psest_0761 0.82 +0.1 831,118 + Psest_0761 0.82 -2.4 831,119 - Psest_0761 0.82 +1.3 831,119 - Psest_0761 0.82 -1.1 831,119 - Psest_0761 0.82 +0.8 831,119 - Psest_0761 0.82 -0.3 831,119 - Psest_0761 0.82 +0.5 831,119 - Psest_0761 0.82 -0.5 831,119 - Psest_0761 0.82 -0.2 831,119 - Psest_0761 0.82 -2.1 831,198 + Psest_0761 0.89 -0.4 831,508 + Psest_0762 0.15 +0.1 831,727 + Psest_0762 0.31 -0.4 831,727 + Psest_0762 0.31 +2.1 831,728 - Psest_0762 0.32 +2.0 831,728 - Psest_0762 0.32 +5.4 831,728 - Psest_0762 0.32 +1.1 831,744 - Psest_0762 0.33 -1.2 831,878 - Psest_0762 0.43 -1.0 831,976 + Psest_0762 0.51 -2.0 831,976 + Psest_0762 0.51 +0.9 831,976 + Psest_0762 0.51 -0.9 831,976 + Psest_0762 0.51 +2.5 831,976 + Psest_0762 0.51 +0.1 831,977 - Psest_0762 0.51 -0.4 831,977 - Psest_0762 0.51 -0.9 831,977 - Psest_0762 0.51 -1.9 831,977 - Psest_0762 0.51 +0.3 831,977 - Psest_0762 0.51 -1.0 831,982 + Psest_0762 0.51 -2.8 832,001 + Psest_0762 0.53 -1.8 832,002 - Psest_0762 0.53 -1.1 832,129 + Psest_0762 0.62 +1.7 832,129 + Psest_0762 0.62 -0.1 832,129 + Psest_0762 0.62 +0.1 832,129 + Psest_0762 0.62 -0.4 832,129 + Psest_0762 0.62 +0.1 832,129 + Psest_0762 0.62 -1.8 832,129 + Psest_0762 0.62 -1.3 832,130 - Psest_0762 0.63 -0.5 832,160 - Psest_0762 0.65 -0.6 832,201 + Psest_0762 0.68 -1.3 832,201 + Psest_0762 0.68 +0.6 832,202 - Psest_0762 0.68 -1.3 832,202 - Psest_0762 0.68 -1.6 832,438 - Psest_0762 0.86 +0.4 832,526 - -0.4 832,526 - -2.0 832,673 + Psest_0763 0.13 -1.2 832,750 + Psest_0763 0.30 +3.4 832,788 + Psest_0763 0.39 -0.1 832,788 + Psest_0763 0.39 +0.1 832,788 + Psest_0763 0.39 -0.3 832,789 - Psest_0763 0.39 -0.9 832,789 - Psest_0763 0.39 +0.4 832,789 - Psest_0763 0.39 -1.6 832,917 + Psest_0763 0.68 +0.7 832,917 + Psest_0763 0.68 -0.8 832,918 - Psest_0763 0.68 -1.2 832,918 - Psest_0763 0.68 +0.6 832,929 + Psest_0763 0.70 -1.0 832,930 - Psest_0763 0.70 -1.5 832,930 - Psest_0763 0.70 +0.1 833,023 + +0.7 833,024 - -1.6 833,064 + +0.2 833,064 + -0.1 833,064 + -0.1 833,064 + -0.6 833,064 + +0.9 833,064 + +1.0 833,064 + -0.3 833,064 + +0.7 833,064 + +0.7 833,064 + +2.9 833,064 + +3.0 833,064 + +1.0 833,064 + +0.8 833,064 + -1.6 833,064 + -0.8 833,064 + -0.4 833,064 + -2.6 833,064 + +2.8 833,065 - -1.6 833,065 - -0.6 833,065 - -1.8 833,065 - -1.8 833,065 - +1.8 833,065 - +0.4 833,068 + +1.6 833,068 + -0.3 833,144 + -0.7 833,145 - -0.3 833,359 + -2.1 833,359 + +0.3 833,359 + +1.6 833,359 + -2.1 833,359 + +0.5 833,359 + -0.6 833,359 + -0.6 833,359 + -1.1 833,359 + -2.7 833,359 + -2.4 833,359 + -1.1 833,359 + +0.1 833,359 + +1.3 833,359 + -1.3 833,359 + -0.2 833,360 - +1.0 833,360 - +1.9 833,360 - +1.7 833,360 - -2.1 833,360 - -1.1 833,360 - -0.6 833,360 - -0.4 833,360 - -0.1 833,360 - +0.1 833,360 - -1.8 833,587 + Psest_0764 0.18 +0.9 833,587 + Psest_0764 0.18 -2.0 833,587 + Psest_0764 0.18 +0.7 833,587 + Psest_0764 0.18 -1.8 833,588 - Psest_0764 0.18 +1.0 833,588 - Psest_0764 0.18 -0.3 833,588 - Psest_0764 0.18 -1.6 833,588 - Psest_0764 0.18 -0.9 833,588 - Psest_0764 0.18 -1.0 833,588 - Psest_0764 0.18 -1.4 833,588 - Psest_0764 0.18 +0.7 833,588 - Psest_0764 0.18 -1.6 833,588 - Psest_0764 0.18 +0.3 833,588 - Psest_0764 0.18 -2.2 833,588 - Psest_0764 0.18 +0.2 833,588 - Psest_0764 0.18 -0.5 833,588 - Psest_0764 0.18 +0.8 833,588 - Psest_0764 0.18 -0.6 833,588 - Psest_0764 0.18 +1.9 833,588 - Psest_0764 0.18 -0.6
Or see this region's nucleotide sequence