Experiment: Def Neomycin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0715 and Psest_0716 are separated by 53 nucleotides Psest_0716 and Psest_0717 are separated by 121 nucleotides Psest_0717 and Psest_0718 are separated by 429 nucleotides
Psest_0715: Psest_0715 - NADH dehydrogenase, FAD-containing subunit, at 783,470 to 784,765
_0715
Psest_0716: Psest_0716 - Protein of unknown function (DUF3094)., at 784,819 to 784,992
_0716
Psest_0717: Psest_0717 - Protein of unknown function (DUF1631)., at 785,114 to 787,372
_0717
Psest_0718: Psest_0718 - nicotinate-nucleotide pyrophosphorylase, at 787,802 to 788,650
_0718
Position (kb) 785
786
787
788 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 784.116 kb on - strand, within Psest_0715 at 784.179 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.300 kb on + strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.301 kb on - strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.302 kb on + strand, within Psest_0715 at 784.303 kb on - strand, within Psest_0715 at 784.303 kb on - strand, within Psest_0715 at 784.431 kb on + strand, within Psest_0715 at 784.431 kb on + strand, within Psest_0715 at 784.431 kb on + strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.432 kb on - strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.572 kb on + strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.573 kb on - strand, within Psest_0715 at 784.749 kb on - strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.778 kb on + strand at 784.779 kb on - strand at 784.779 kb on - strand at 784.779 kb on - strand at 784.779 kb on - strand at 784.946 kb on + strand, within Psest_0716 at 784.946 kb on + strand, within Psest_0716 at 784.947 kb on - strand, within Psest_0716 at 784.947 kb on - strand, within Psest_0716 at 784.992 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.021 kb on + strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.022 kb on - strand at 785.025 kb on + strand at 785.026 kb on - strand at 785.026 kb on - strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.277 kb on + strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.278 kb on - strand at 785.717 kb on + strand, within Psest_0717 at 785.737 kb on + strand, within Psest_0717 at 785.737 kb on + strand, within Psest_0717 at 785.737 kb on + strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 785.738 kb on - strand, within Psest_0717 at 786.099 kb on + strand, within Psest_0717 at 786.099 kb on + strand, within Psest_0717 at 786.100 kb on - strand, within Psest_0717 at 786.347 kb on + strand, within Psest_0717 at 786.530 kb on - strand, within Psest_0717 at 786.735 kb on + strand, within Psest_0717 at 786.735 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.758 kb on + strand, within Psest_0717 at 786.759 kb on - strand, within Psest_0717 at 786.759 kb on - strand, within Psest_0717 at 786.759 kb on - strand, within Psest_0717 at 786.759 kb on - strand, within Psest_0717 at 786.759 kb on - strand, within Psest_0717 at 786.759 kb on - strand, within Psest_0717 at 786.762 kb on + strand, within Psest_0717 at 786.762 kb on + strand, within Psest_0717 at 786.762 kb on + strand, within Psest_0717 at 786.762 kb on + strand, within Psest_0717 at 786.794 kb on + strand, within Psest_0717 at 786.794 kb on + strand, within Psest_0717 at 786.794 kb on + strand, within Psest_0717 at 786.795 kb on - strand, within Psest_0717 at 786.795 kb on - strand, within Psest_0717 at 786.795 kb on - strand, within Psest_0717 at 787.004 kb on + strand, within Psest_0717 at 787.005 kb on - strand, within Psest_0717 at 787.005 kb on - strand, within Psest_0717 at 787.230 kb on - strand at 787.397 kb on + strand at 787.397 kb on + strand at 787.398 kb on - strand at 787.438 kb on - strand at 787.440 kb on + strand at 787.440 kb on + strand at 787.440 kb on + strand at 787.440 kb on + strand at 787.440 kb on + strand at 787.445 kb on + strand at 787.445 kb on + strand at 787.494 kb on + strand at 787.494 kb on + strand at 787.494 kb on + strand at 787.494 kb on + strand at 787.494 kb on + strand at 787.494 kb on + strand at 787.494 kb on + strand at 787.494 kb on + strand at 787.495 kb on - strand at 787.495 kb on - strand at 787.556 kb on + strand at 787.557 kb on - strand at 787.618 kb on + strand at 787.619 kb on - strand at 787.619 kb on - strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.620 kb on + strand at 787.621 kb on - strand at 787.621 kb on - strand at 787.772 kb on + strand at 787.772 kb on + strand at 787.772 kb on + strand at 787.772 kb on + strand at 787.772 kb on + strand at 787.772 kb on + strand at 787.773 kb on - strand at 787.775 kb on - strand at 787.775 kb on - strand at 787.775 kb on - strand at 787.851 kb on + strand at 787.851 kb on + strand at 787.851 kb on + strand at 787.851 kb on + strand at 787.851 kb on + strand at 787.851 kb on + strand at 787.851 kb on + strand at 787.851 kb on + strand at 787.851 kb on + strand at 787.851 kb on + strand at 787.852 kb on - strand at 787.852 kb on - strand at 787.852 kb on - strand at 787.852 kb on - strand at 787.852 kb on - strand at 788.165 kb on + strand, within Psest_0718 at 788.246 kb on + strand, within Psest_0718 at 788.246 kb on + strand, within Psest_0718 at 788.291 kb on + strand, within Psest_0718 at 788.291 kb on + strand, within Psest_0718 at 788.305 kb on + strand, within Psest_0718 at 788.305 kb on + strand, within Psest_0718 at 788.306 kb on - strand, within Psest_0718
Per-strain Table
Position Strand Gene LocusTag Fraction Def Neomycin 0.0008 mg/ml remove 784,116 - Psest_0715 0.50 +0.8 784,179 + Psest_0715 0.55 -1.5 784,300 + Psest_0715 0.64 -3.4 784,300 + Psest_0715 0.64 +1.3 784,300 + Psest_0715 0.64 -0.1 784,300 + Psest_0715 0.64 +0.9 784,300 + Psest_0715 0.64 -0.6 784,300 + Psest_0715 0.64 -0.5 784,300 + Psest_0715 0.64 +1.4 784,300 + Psest_0715 0.64 -0.3 784,300 + Psest_0715 0.64 +0.7 784,300 + Psest_0715 0.64 -1.2 784,301 - Psest_0715 0.64 -0.7 784,301 - Psest_0715 0.64 -0.9 784,301 - Psest_0715 0.64 +0.1 784,301 - Psest_0715 0.64 -1.9 784,301 - Psest_0715 0.64 -1.0 784,301 - Psest_0715 0.64 -0.9 784,301 - Psest_0715 0.64 -3.3 784,301 - Psest_0715 0.64 +0.8 784,301 - Psest_0715 0.64 -0.6 784,301 - Psest_0715 0.64 +0.7 784,301 - Psest_0715 0.64 -0.9 784,301 - Psest_0715 0.64 -1.8 784,302 + Psest_0715 0.64 -1.7 784,302 + Psest_0715 0.64 -0.8 784,302 + Psest_0715 0.64 +0.0 784,302 + Psest_0715 0.64 -1.0 784,302 + Psest_0715 0.64 -1.2 784,302 + Psest_0715 0.64 -0.9 784,302 + Psest_0715 0.64 +0.7 784,302 + Psest_0715 0.64 +0.4 784,303 - Psest_0715 0.64 -1.3 784,303 - Psest_0715 0.64 +0.2 784,431 + Psest_0715 0.74 +0.4 784,431 + Psest_0715 0.74 -0.5 784,431 + Psest_0715 0.74 +0.1 784,432 - Psest_0715 0.74 -2.5 784,432 - Psest_0715 0.74 -0.3 784,432 - Psest_0715 0.74 -0.5 784,432 - Psest_0715 0.74 -0.5 784,432 - Psest_0715 0.74 -1.1 784,432 - Psest_0715 0.74 -0.4 784,432 - Psest_0715 0.74 -0.7 784,572 + Psest_0715 0.85 -1.6 784,572 + Psest_0715 0.85 -1.8 784,572 + Psest_0715 0.85 -3.9 784,572 + Psest_0715 0.85 -1.0 784,572 + Psest_0715 0.85 +1.1 784,573 - Psest_0715 0.85 -2.0 784,573 - Psest_0715 0.85 -0.6 784,573 - Psest_0715 0.85 -1.4 784,573 - Psest_0715 0.85 -2.2 784,573 - Psest_0715 0.85 +0.4 784,573 - Psest_0715 0.85 -2.1 784,573 - Psest_0715 0.85 -0.3 784,573 - Psest_0715 0.85 -0.3 784,573 - Psest_0715 0.85 -0.7 784,573 - Psest_0715 0.85 -0.9 784,573 - Psest_0715 0.85 +0.6 784,573 - Psest_0715 0.85 -0.0 784,573 - Psest_0715 0.85 -2.8 784,573 - Psest_0715 0.85 +0.0 784,749 - +0.9 784,778 + +0.3 784,778 + +0.6 784,778 + +0.5 784,778 + -2.9 784,778 + -0.8 784,779 - +1.0 784,779 - +0.6 784,779 - +0.1 784,779 - +0.6 784,946 + Psest_0716 0.73 +1.2 784,946 + Psest_0716 0.73 -0.0 784,947 - Psest_0716 0.74 -0.7 784,947 - Psest_0716 0.74 +1.5 784,992 + +1.4 785,021 + +1.0 785,021 + -1.7 785,021 + +1.7 785,021 + -0.8 785,021 + -1.8 785,022 - +1.7 785,022 - -2.3 785,022 - +0.4 785,022 - +1.4 785,022 - -0.8 785,022 - -0.5 785,022 - -0.8 785,025 + -1.6 785,026 - -2.2 785,026 - +0.2 785,277 + -0.7 785,277 + -0.5 785,277 + -0.7 785,277 + -1.4 785,277 + -1.1 785,277 + -0.2 785,277 + -1.8 785,277 + -1.6 785,277 + -0.4 785,277 + -0.9 785,277 + -2.2 785,277 + -1.2 785,277 + -2.8 785,278 - -1.4 785,278 - -1.6 785,278 - -0.7 785,278 - -2.1 785,278 - -0.6 785,717 + Psest_0717 0.27 +0.4 785,737 + Psest_0717 0.28 -1.6 785,737 + Psest_0717 0.28 -3.0 785,737 + Psest_0717 0.28 -0.4 785,738 - Psest_0717 0.28 -0.7 785,738 - Psest_0717 0.28 +1.2 785,738 - Psest_0717 0.28 -0.6 785,738 - Psest_0717 0.28 -1.7 785,738 - Psest_0717 0.28 -0.5 785,738 - Psest_0717 0.28 +0.7 785,738 - Psest_0717 0.28 -0.2 785,738 - Psest_0717 0.28 -0.6 785,738 - Psest_0717 0.28 -3.1 785,738 - Psest_0717 0.28 +0.4 785,738 - Psest_0717 0.28 -1.3 785,738 - Psest_0717 0.28 -0.6 786,099 + Psest_0717 0.44 -2.9 786,099 + Psest_0717 0.44 -1.5 786,100 - Psest_0717 0.44 -1.5 786,347 + Psest_0717 0.55 -2.4 786,530 - Psest_0717 0.63 -1.1 786,735 + Psest_0717 0.72 -1.9 786,735 + Psest_0717 0.72 -1.0 786,758 + Psest_0717 0.73 -0.9 786,758 + Psest_0717 0.73 -1.6 786,758 + Psest_0717 0.73 -0.1 786,758 + Psest_0717 0.73 -1.0 786,758 + Psest_0717 0.73 -0.3 786,758 + Psest_0717 0.73 -2.7 786,758 + Psest_0717 0.73 -1.3 786,758 + Psest_0717 0.73 -0.6 786,758 + Psest_0717 0.73 -1.6 786,758 + Psest_0717 0.73 -1.5 786,758 + Psest_0717 0.73 -2.5 786,758 + Psest_0717 0.73 -0.7 786,758 + Psest_0717 0.73 -1.0 786,758 + Psest_0717 0.73 -0.9 786,758 + Psest_0717 0.73 -1.3 786,759 - Psest_0717 0.73 -2.4 786,759 - Psest_0717 0.73 -1.9 786,759 - Psest_0717 0.73 -1.6 786,759 - Psest_0717 0.73 +0.4 786,759 - Psest_0717 0.73 -0.7 786,759 - Psest_0717 0.73 -1.3 786,762 + Psest_0717 0.73 -0.4 786,762 + Psest_0717 0.73 -2.5 786,762 + Psest_0717 0.73 -0.2 786,762 + Psest_0717 0.73 -2.9 786,794 + Psest_0717 0.74 -0.7 786,794 + Psest_0717 0.74 -1.9 786,794 + Psest_0717 0.74 -1.8 786,795 - Psest_0717 0.74 -0.6 786,795 - Psest_0717 0.74 -0.9 786,795 - Psest_0717 0.74 -1.9 787,004 + Psest_0717 0.84 -1.0 787,005 - Psest_0717 0.84 -1.9 787,005 - Psest_0717 0.84 -0.4 787,230 - -2.0 787,397 + +0.1 787,397 + +0.0 787,398 - -2.7 787,438 - -2.1 787,440 + -1.6 787,440 + -0.7 787,440 + -1.2 787,440 + -0.9 787,440 + +0.3 787,445 + -0.8 787,445 + +0.4 787,494 + -2.7 787,494 + -1.5 787,494 + -1.8 787,494 + -1.2 787,494 + -1.8 787,494 + -0.5 787,494 + -0.9 787,494 + -0.9 787,495 - -0.3 787,495 - -1.3 787,556 + -0.4 787,557 - -0.6 787,618 + +1.3 787,619 - -1.5 787,619 - -1.0 787,620 + -0.8 787,620 + -1.1 787,620 + +1.9 787,620 + -0.0 787,620 + -1.4 787,620 + -0.4 787,620 + -0.2 787,620 + -1.9 787,620 + -0.4 787,620 + -0.9 787,620 + +0.5 787,620 + -0.8 787,620 + -0.1 787,620 + -0.8 787,620 + -0.0 787,620 + -0.0 787,620 + +0.6 787,620 + +0.6 787,620 + -0.1 787,620 + -0.1 787,620 + -1.5 787,620 + +0.2 787,621 - +0.5 787,621 - +2.5 787,772 + -0.6 787,772 + +1.1 787,772 + +0.5 787,772 + -2.0 787,772 + -0.8 787,772 + -0.9 787,773 - +1.1 787,775 - -0.7 787,775 - -1.9 787,775 - -1.9 787,851 + -0.3 787,851 + -3.6 787,851 + -3.7 787,851 + -2.4 787,851 + -0.7 787,851 + -1.7 787,851 + -0.6 787,851 + -2.2 787,851 + -2.8 787,851 + -2.1 787,852 - -1.5 787,852 - -3.3 787,852 - -3.0 787,852 - -3.0 787,852 - -1.9 788,165 + Psest_0718 0.43 -2.5 788,246 + Psest_0718 0.52 +0.1 788,246 + Psest_0718 0.52 -3.4 788,291 + Psest_0718 0.58 -1.9 788,291 + Psest_0718 0.58 -0.6 788,305 + Psest_0718 0.59 -3.2 788,305 + Psest_0718 0.59 -1.5 788,306 - Psest_0718 0.59 -2.0
Or see this region's nucleotide sequence