Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0044

Experiment: Def Neomycin 0.0008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def Neomycin 0.0008 mg/ml
46,827	+		Psest_0043	0.53	+0.6
46,827	+		Psest_0043	0.53	+1.7
46,827	+		Psest_0043	0.53	+0.0
46,827	+		Psest_0043	0.53	+1.6
46,827	+		Psest_0043	0.53	+1.3
46,827	+		Psest_0043	0.53	-2.2
46,827	+		Psest_0043	0.53	+0.1
46,827	+		Psest_0043	0.53	-1.2
46,827	+		Psest_0043	0.53	-0.2
46,827	+		Psest_0043	0.53	-1.0
46,827	+		Psest_0043	0.53	+0.3
46,827	+		Psest_0043	0.53	-1.4
46,827	+		Psest_0043	0.53	-1.7
46,827	+		Psest_0043	0.53	+0.8
46,827	+		Psest_0043	0.53	-0.4
46,827	+		Psest_0043	0.53	+0.5
46,828	-		Psest_0043	0.54	-2.5
46,828	-		Psest_0043	0.54	-0.3
46,828	-		Psest_0043	0.54	-0.9
46,828	-		Psest_0043	0.54	+1.4
46,828	-		Psest_0043	0.54	-0.9
46,828	-		Psest_0043	0.54	+2.3
46,828	-		Psest_0043	0.54	+0.7
46,828	-		Psest_0043	0.54	+1.3
46,828	-		Psest_0043	0.54	+1.2
46,828	-		Psest_0043	0.54	-0.3
46,828	-		Psest_0043	0.54	+1.1
46,828	-		Psest_0043	0.54	+0.8
46,828	-		Psest_0043	0.54	+1.5
46,828	-		Psest_0043	0.54	+3.3
46,828	-		Psest_0043	0.54	+0.8
46,828	-		Psest_0043	0.54	+3.3
46,828	-		Psest_0043	0.54	-0.3
46,828	-		Psest_0043	0.54	+1.4
46,828	-		Psest_0043	0.54	+0.3
46,828	-		Psest_0043	0.54	+0.5
46,828	-		Psest_0043	0.54	-0.4
46,828	-		Psest_0043	0.54	+0.7
46,992	-		Psest_0043	0.83	-0.3
47,002	+		Psest_0043	0.85	+1.5
47,003	-		Psest_0043	0.85	+1.7
47,003	-		Psest_0043	0.85	-0.4
47,004	+		Psest_0043	0.86	+1.1
47,004	+		Psest_0043	0.86	-0.7
47,004	+		Psest_0043	0.86	+1.0
47,004	+		Psest_0043	0.86	-1.4
47,004	+		Psest_0043	0.86	+0.1
47,004	+		Psest_0043	0.86	-0.4
47,004	+		Psest_0043	0.86	+2.4
47,004	+		Psest_0043	0.86	-0.8
47,004	+		Psest_0043	0.86	-2.0
47,004	+		Psest_0043	0.86	+0.1
47,004	+		Psest_0043	0.86	+1.3
47,004	+		Psest_0043	0.86	-0.3
47,004	+		Psest_0043	0.86	+0.7
47,004	+		Psest_0043	0.86	+0.7
47,004	+		Psest_0043	0.86	-0.8
47,005	-		Psest_0043	0.86	+2.3
47,005	-		Psest_0043	0.86	+0.3
47,005	-		Psest_0043	0.86	+0.1
47,005	-		Psest_0043	0.86	+1.7
47,005	-		Psest_0043	0.86	-0.9
47,005	-		Psest_0043	0.86	+2.7
47,005	-		Psest_0043	0.86	+3.7
47,005	-		Psest_0043	0.86	-0.1
47,005	-		Psest_0043	0.86	-1.1
47,005	-		Psest_0043	0.86	-2.3
47,005	-		Psest_0043	0.86	+1.9
47,005	-		Psest_0043	0.86	-0.9
47,005	-		Psest_0043	0.86	+0.4
47,005	-		Psest_0043	0.86	+1.1
47,033	+				-1.9
47,034	-				+0.5
47,084	-				-0.6
47,084	-				+2.7
47,092	+				-1.3
47,092	+				+1.1
47,092	+				+1.6
47,092	+				+1.1
47,092	+				+1.9
47,092	+				+0.1
47,092	+				+0.4
47,093	-				-1.3
47,093	-				+0.7
47,093	-				+1.7
47,093	-				+1.7
47,093	-				+2.0
47,093	-				+0.1
47,093	-				-0.4
47,093	-				+0.1
47,093	-				+1.4
47,093	-				+1.1
47,093	-				-0.2
47,093	-				+0.4
47,093	-				+0.7
47,093	-				+3.8
47,093	-				-0.4
47,093	-				+1.7
47,093	-				-0.8
47,093	-				+3.6
47,093	-				-1.3
47,093	-				+0.3
47,093	-				+0.7
47,111	+				+1.0
47,111	+				-0.0
47,112	-				+0.1
47,112	-				-0.4
47,112	-				+1.0
47,303	+				+1.7
47,303	+				-0.0
47,304	-				-0.2
47,304	-				+1.8
47,304	-				+0.9
47,304	-				+2.9
47,404	+				+0.7
47,405	-		Psest_0044	0.35	+2.4
47,405	-		Psest_0044	0.35	+0.2
47,405	-		Psest_0044	0.35	+1.4
47,405	-		Psest_0044	0.35	+1.0
47,405	-		Psest_0044	0.35	+1.1
47,405	-		Psest_0044	0.35	-1.5
47,405	-		Psest_0044	0.35	+0.8
47,405	-		Psest_0044	0.35	+0.3
47,405	-		Psest_0044	0.35	-0.3
47,534	-		Psest_0044	0.82	+0.7
47,534	-		Psest_0044	0.82	+0.2
47,534	-		Psest_0044	0.82	+2.6
47,534	-		Psest_0044	0.82	+0.8
47,534	-		Psest_0044	0.82	+0.7
47,534	-		Psest_0044	0.82	+2.3
47,534	-		Psest_0044	0.82	+1.0
47,534	-		Psest_0044	0.82	-0.0
47,534	-		Psest_0044	0.82	+1.2
47,534	-		Psest_0044	0.82	-0.9
47,534	-		Psest_0044	0.82	-0.9
47,534	-		Psest_0044	0.82	+0.2
47,542	-		Psest_0044	0.85	+2.3
47,727	-				-1.0
47,758	+				-1.4
47,759	-				-1.5
47,792	+				+0.1
47,792	+				-0.3
47,916	+				-1.0
47,916	+				+1.9
47,917	-				+1.0
47,917	-				+1.2
47,917	-				+0.4
47,917	-				+0.0
48,030	-				-1.3
48,046	-		Psest_0045	0.13	+1.1
48,046	-		Psest_0045	0.13	+0.7
48,046	-		Psest_0045	0.13	-1.1
48,051	-		Psest_0045	0.14	+0.7
48,056	+		Psest_0045	0.15	-0.6
48,078	-		Psest_0045	0.21	+1.3
48,112	+		Psest_0045	0.30	-0.3
48,113	-		Psest_0045	0.30	-0.6
48,114	+		Psest_0045	0.31	-0.2
48,115	-		Psest_0045	0.31	-0.9
48,116	+		Psest_0045	0.31	+3.7
48,207	-		Psest_0045	0.55	-0.6
48,281	-		Psest_0045	0.75	+1.4
48,295	+		Psest_0045	0.79	+1.5
48,335	-		Psest_0045	0.89	+1.9
48,341	-				-1.1
48,341	-				+0.1
48,354	-				-0.6
48,451	-				+0.1
48,473	-				-1.8
48,480	+				+1.4
48,480	+				+1.8
48,481	-				+1.8
48,494	+				-2.5
48,494	+				+0.8
48,494	+				+1.7
48,494	+				-1.5
48,494	+				+2.8
48,494	+				-0.2
48,495	-				-0.5
48,495	-				+1.3
48,495	-				+0.3
48,495	-				+0.7
48,495	-				+0.4
48,495	-				+1.2
48,495	-				+2.9
48,495	-				+0.7
48,500	+				+0.6
48,500	+				+0.3
48,500	+				+1.7
48,501	-				-2.4
48,512	-				+0.7
48,533	-				+0.6
48,582	-				-0.6