Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0429

Experiment: Def Neomycin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0428 and Psest_0429 overlap by 4 nucleotidesPsest_0429 and Psest_0430 are separated by 8 nucleotidesPsest_0430 and Psest_0431 are separated by 8 nucleotides Psest_0428: Psest_0428 - phosphonate ABC transporter, ATP-binding protein, at 466,298 to 467,125 _0428 Psest_0429: Psest_0429 - phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein, at 467,122 to 467,985 _0429 Psest_0430: Psest_0430 - phosphonate ABC transporter, permease protein PhnE, at 467,994 to 468,821 _0430 Psest_0431: Psest_0431 - Lactate dehydrogenase and related dehydrogenases, at 468,830 to 469,840 _0431 Position (kb) 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 466.133 kb on - strandat 466.190 kb on + strandat 466.190 kb on + strandat 466.190 kb on + strandat 466.190 kb on + strandat 466.191 kb on - strandat 466.191 kb on - strandat 466.191 kb on - strandat 466.191 kb on - strandat 466.191 kb on - strandat 466.378 kb on - strandat 466.587 kb on + strand, within Psest_0428at 466.587 kb on + strand, within Psest_0428at 466.937 kb on + strand, within Psest_0428at 467.039 kb on + strand, within Psest_0428at 467.039 kb on + strand, within Psest_0428at 467.039 kb on + strand, within Psest_0428at 467.039 kb on + strand, within Psest_0428at 467.039 kb on + strand, within Psest_0428at 467.039 kb on + strand, within Psest_0428at 467.039 kb on + strand, within Psest_0428at 467.039 kb on + strand, within Psest_0428at 467.039 kb on + strand, within Psest_0428at 467.040 kb on - strand, within Psest_0428at 467.040 kb on - strand, within Psest_0428at 467.040 kb on - strand, within Psest_0428at 467.040 kb on - strand, within Psest_0428at 467.040 kb on - strand, within Psest_0428at 467.040 kb on - strand, within Psest_0428at 467.040 kb on - strand, within Psest_0428at 467.040 kb on - strand, within Psest_0428at 467.040 kb on - strand, within Psest_0428at 467.040 kb on - strand, within Psest_0428at 467.054 kb on - strandat 467.133 kb on - strandat 467.144 kb on + strandat 467.144 kb on + strandat 467.144 kb on + strandat 467.145 kb on - strandat 467.213 kb on + strand, within Psest_0429at 467.214 kb on - strand, within Psest_0429at 467.282 kb on - strand, within Psest_0429at 467.332 kb on + strand, within Psest_0429at 467.368 kb on - strand, within Psest_0429at 467.380 kb on + strand, within Psest_0429at 467.380 kb on + strand, within Psest_0429at 467.381 kb on - strand, within Psest_0429at 467.398 kb on + strand, within Psest_0429at 467.399 kb on - strand, within Psest_0429at 467.399 kb on - strand, within Psest_0429at 467.399 kb on - strand, within Psest_0429at 467.399 kb on - strand, within Psest_0429at 467.467 kb on + strand, within Psest_0429at 467.467 kb on + strand, within Psest_0429at 467.467 kb on + strand, within Psest_0429at 467.468 kb on - strand, within Psest_0429at 467.512 kb on + strand, within Psest_0429at 467.523 kb on + strand, within Psest_0429at 467.524 kb on - strand, within Psest_0429at 467.542 kb on + strand, within Psest_0429at 467.542 kb on + strand, within Psest_0429at 467.543 kb on - strand, within Psest_0429at 467.627 kb on - strand, within Psest_0429at 467.712 kb on - strand, within Psest_0429at 467.712 kb on - strand, within Psest_0429at 467.712 kb on - strand, within Psest_0429at 467.712 kb on - strand, within Psest_0429at 467.765 kb on + strand, within Psest_0429at 467.765 kb on + strand, within Psest_0429at 467.766 kb on - strand, within Psest_0429at 467.766 kb on - strand, within Psest_0429at 467.766 kb on - strand, within Psest_0429at 467.766 kb on - strand, within Psest_0429at 467.766 kb on - strand, within Psest_0429at 467.766 kb on - strand, within Psest_0429at 467.766 kb on - strand, within Psest_0429at 467.766 kb on - strand, within Psest_0429at 467.766 kb on - strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.993 kb on + strandat 468.007 kb on - strandat 468.100 kb on + strand, within Psest_0430at 468.100 kb on + strand, within Psest_0430at 468.101 kb on - strand, within Psest_0430at 468.101 kb on - strand, within Psest_0430at 468.101 kb on - strand, within Psest_0430at 468.129 kb on + strand, within Psest_0430at 468.130 kb on - strand, within Psest_0430at 468.130 kb on - strand, within Psest_0430at 468.630 kb on + strand, within Psest_0430at 468.642 kb on + strand, within Psest_0430at 468.642 kb on + strand, within Psest_0430at 468.643 kb on - strand, within Psest_0430at 468.729 kb on + strand, within Psest_0430at 468.730 kb on - strand, within Psest_0430at 468.779 kb on - strandat 468.779 kb on - strandat 468.781 kb on + strandat 468.781 kb on + strandat 468.782 kb on - strandat 468.782 kb on - strandat 468.782 kb on - strandat 468.819 kb on + strandat 468.847 kb on + strandat 468.848 kb on - strandat 468.849 kb on + strandat 468.849 kb on + strandat 468.849 kb on + strandat 468.849 kb on + strandat 468.849 kb on + strandat 468.849 kb on + strandat 468.850 kb on - strandat 468.850 kb on - strandat 468.850 kb on - strandat 468.850 kb on - strandat 468.850 kb on - strandat 468.861 kb on + strandat 468.862 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Neomycin 0.0008 mg/ml
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466,133 - -0.0
466,190 + -0.7
466,190 + -0.6
466,190 + -1.2
466,190 + -1.7
466,191 - -3.0
466,191 - +1.5
466,191 - -0.4
466,191 - -1.0
466,191 - +0.2
466,378 - +0.9
466,587 + Psest_0428 0.35 -0.9
466,587 + Psest_0428 0.35 -0.2
466,937 + Psest_0428 0.77 -2.5
467,039 + Psest_0428 0.89 -0.9
467,039 + Psest_0428 0.89 -1.7
467,039 + Psest_0428 0.89 -0.1
467,039 + Psest_0428 0.89 +0.2
467,039 + Psest_0428 0.89 +1.6
467,039 + Psest_0428 0.89 +0.3
467,039 + Psest_0428 0.89 -1.5
467,039 + Psest_0428 0.89 -0.0
467,039 + Psest_0428 0.89 -1.7
467,040 - Psest_0428 0.90 +0.3
467,040 - Psest_0428 0.90 +0.8
467,040 - Psest_0428 0.90 -1.0
467,040 - Psest_0428 0.90 -3.7
467,040 - Psest_0428 0.90 +0.6
467,040 - Psest_0428 0.90 -0.9
467,040 - Psest_0428 0.90 -1.1
467,040 - Psest_0428 0.90 +0.9
467,040 - Psest_0428 0.90 -0.1
467,040 - Psest_0428 0.90 +0.9
467,054 - -0.2
467,133 - +0.2
467,144 + +0.8
467,144 + -2.8
467,144 + +1.0
467,145 - -0.6
467,213 + Psest_0429 0.11 -2.0
467,214 - Psest_0429 0.11 +1.0
467,282 - Psest_0429 0.19 -0.8
467,332 + Psest_0429 0.24 -0.5
467,368 - Psest_0429 0.28 -0.8
467,380 + Psest_0429 0.30 +0.0
467,380 + Psest_0429 0.30 -0.3
467,381 - Psest_0429 0.30 -0.9
467,398 + Psest_0429 0.32 -0.7
467,399 - Psest_0429 0.32 -0.1
467,399 - Psest_0429 0.32 -2.8
467,399 - Psest_0429 0.32 +0.4
467,399 - Psest_0429 0.32 -0.6
467,467 + Psest_0429 0.40 +0.0
467,467 + Psest_0429 0.40 -2.3
467,467 + Psest_0429 0.40 -0.3
467,468 - Psest_0429 0.40 +2.7
467,512 + Psest_0429 0.45 +0.3
467,523 + Psest_0429 0.46 -2.0
467,524 - Psest_0429 0.47 -0.8
467,542 + Psest_0429 0.49 -1.2
467,542 + Psest_0429 0.49 -1.2
467,543 - Psest_0429 0.49 -0.2
467,627 - Psest_0429 0.58 +0.2
467,712 - Psest_0429 0.68 +0.1
467,712 - Psest_0429 0.68 +2.6
467,712 - Psest_0429 0.68 +1.1
467,712 - Psest_0429 0.68 -1.8
467,765 + Psest_0429 0.74 +0.0
467,765 + Psest_0429 0.74 -1.6
467,766 - Psest_0429 0.75 -0.3
467,766 - Psest_0429 0.75 -2.4
467,766 - Psest_0429 0.75 +0.7
467,766 - Psest_0429 0.75 +0.6
467,766 - Psest_0429 0.75 -1.9
467,766 - Psest_0429 0.75 +0.5
467,766 - Psest_0429 0.75 +0.4
467,766 - Psest_0429 0.75 +0.3
467,766 - Psest_0429 0.75 -0.4
467,852 + Psest_0429 0.84 -1.0
467,852 + Psest_0429 0.84 -0.5
467,852 + Psest_0429 0.84 +2.0
467,852 + Psest_0429 0.84 -0.4
467,852 + Psest_0429 0.84 +0.3
467,852 + Psest_0429 0.84 -0.9
467,853 - Psest_0429 0.85 +1.2
467,853 - Psest_0429 0.85 +0.9
467,853 - Psest_0429 0.85 -2.0
467,853 - Psest_0429 0.85 -0.4
467,853 - Psest_0429 0.85 +1.0
467,853 - Psest_0429 0.85 -1.9
467,993 + -0.4
468,007 - -1.4
468,100 + Psest_0430 0.13 -0.6
468,100 + Psest_0430 0.13 -0.1
468,101 - Psest_0430 0.13 +0.6
468,101 - Psest_0430 0.13 -0.6
468,101 - Psest_0430 0.13 -0.2
468,129 + Psest_0430 0.16 -0.7
468,130 - Psest_0430 0.16 -0.3
468,130 - Psest_0430 0.16 -3.0
468,630 + Psest_0430 0.77 -1.1
468,642 + Psest_0430 0.78 +0.7
468,642 + Psest_0430 0.78 +0.8
468,643 - Psest_0430 0.78 +0.1
468,729 + Psest_0430 0.89 -1.4
468,730 - Psest_0430 0.89 -0.2
468,779 - -1.4
468,779 - -0.4
468,781 + -1.5
468,781 + +0.5
468,782 - -2.9
468,782 - -2.3
468,782 - +0.2
468,819 + -0.6
468,847 + +0.4
468,848 - +2.1
468,849 + +0.2
468,849 + -1.0
468,849 + -1.8
468,849 + -0.6
468,849 + -2.3
468,849 + +1.7
468,850 - -1.7
468,850 - +0.4
468,850 - +0.2
468,850 - +0.6
468,850 - -1.2
468,861 + +0.6
468,862 - -0.3

Or see this region's nucleotide sequence