Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4285

Experiment: Def Neomycin 0.0008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def Neomycin 0.0008 mg/ml
4,476,135	+		Psest_4284	0.33	-1.2
4,476,135	+		Psest_4284	0.33	+0.4
4,476,135	+		Psest_4284	0.33	+0.3
4,476,135	+		Psest_4284	0.33	-2.6
4,476,135	+		Psest_4284	0.33	+2.1
4,476,135	+		Psest_4284	0.33	-0.1
4,476,135	+		Psest_4284	0.33	+0.0
4,476,135	+		Psest_4284	0.33	+0.1
4,476,135	+		Psest_4284	0.33	+0.5
4,476,136	-		Psest_4284	0.34	-3.3
4,476,136	-		Psest_4284	0.34	-2.3
4,476,136	-		Psest_4284	0.34	-1.3
4,476,136	-		Psest_4284	0.34	-1.2
4,476,136	-		Psest_4284	0.34	-0.2
4,476,195	+		Psest_4284	0.39	+0.5
4,476,195	+		Psest_4284	0.39	-1.2
4,476,195	+		Psest_4284	0.39	+1.0
4,476,195	+		Psest_4284	0.39	+3.3
4,476,195	+		Psest_4284	0.39	-0.8
4,476,195	+		Psest_4284	0.39	+0.3
4,476,195	+		Psest_4284	0.39	-1.7
4,476,196	-		Psest_4284	0.39	-1.0
4,476,196	-		Psest_4284	0.39	-0.7
4,476,196	-		Psest_4284	0.39	-2.6
4,476,196	-		Psest_4284	0.39	-3.5
4,476,196	-		Psest_4284	0.39	+0.8
4,476,196	-		Psest_4284	0.39	+0.9
4,476,196	-		Psest_4284	0.39	-0.5
4,476,300	+		Psest_4284	0.48	-0.6
4,476,301	-		Psest_4284	0.49	-0.1
4,476,301	-		Psest_4284	0.49	-2.1
4,476,453	+		Psest_4284	0.62	+0.7
4,476,480	+		Psest_4284	0.65	-1.2
4,476,480	+		Psest_4284	0.65	-0.8
4,476,481	-		Psest_4284	0.65	-0.5
4,476,702	+		Psest_4284	0.85	-1.4
4,476,759	+				+0.0
4,476,760	-				+0.4
4,476,760	-				+0.9
4,476,760	-				+0.9
4,476,760	-				+1.1
4,476,775	-				-0.5
4,476,775	-				-0.2
4,476,785	+				-1.4
4,476,842	+				+0.6
4,476,842	+				+1.6
4,476,842	+				+0.8
4,476,843	-				+0.3
4,476,843	-				-0.2
4,476,843	-				+1.4
4,476,890	+				-2.3
4,476,891	-				+0.9
4,476,965	+				+2.2
4,476,966	-				-0.6
4,476,966	-				-2.4
4,476,966	-				-1.7
4,477,034	-				-1.6
4,477,056	+				-0.8
4,477,056	+				-2.0
4,477,056	+				-2.0
4,477,056	+				-0.7
4,477,057	-				-0.3
4,477,253	+		Psest_4285	0.12	-0.7
4,477,253	+		Psest_4285	0.12	-2.0
4,477,383	+		Psest_4285	0.22	+0.0
4,477,383	+		Psest_4285	0.22	+0.3
4,477,384	-		Psest_4285	0.22	+0.4
4,477,384	-		Psest_4285	0.22	-0.1
4,477,482	+		Psest_4285	0.29	-2.8
4,477,483	-		Psest_4285	0.29	-0.5
4,477,617	+		Psest_4285	0.39	-1.6
4,477,618	-		Psest_4285	0.39	-0.4
4,477,620	+		Psest_4285	0.39	-2.5
4,477,620	+		Psest_4285	0.39	-1.7
4,477,621	-		Psest_4285	0.39	-1.2
4,477,621	-		Psest_4285	0.39	-1.8
4,477,621	-		Psest_4285	0.39	-3.2
4,477,888	-		Psest_4285	0.59	-0.1
4,477,900	+		Psest_4285	0.60	+0.6
4,478,047	-		Psest_4285	0.71	+1.6
4,478,193	+		Psest_4285	0.82	+1.6
4,478,193	+		Psest_4285	0.82	+1.2
4,478,194	-		Psest_4285	0.82	+1.4
4,478,194	-		Psest_4285	0.82	-1.8
4,478,320	-				+0.6
4,478,374	-				-0.5
4,478,374	-				+0.1
4,478,374	-				+0.6
4,478,459	-				-1.0
4,478,581	+				-1.1
4,478,581	+				-0.0
4,478,581	+				-0.7
4,478,581	+				-1.3
4,478,581	+				+0.7
4,478,581	+				+1.4
4,478,582	-				-2.9
4,478,582	-				-0.1
4,478,582	-				-2.2
4,478,582	-				-0.7
4,478,614	+				+0.2
4,478,641	+				-1.6
4,478,642	-				+0.7
4,478,776	+		Psest_4286	0.18	+0.0
4,478,998	+		Psest_4286	0.35	+1.9
4,478,998	+		Psest_4286	0.35	+1.9
4,478,998	+		Psest_4286	0.35	+0.9
4,478,998	+		Psest_4286	0.35	+1.0
4,478,998	+		Psest_4286	0.35	-1.6
4,478,998	+		Psest_4286	0.35	-2.0
4,478,998	+		Psest_4286	0.35	+1.6
4,478,998	+		Psest_4286	0.35	-2.2
4,478,998	+		Psest_4286	0.35	-1.3
4,478,998	+		Psest_4286	0.35	+0.0
4,478,998	+		Psest_4286	0.35	+1.3
4,478,999	-		Psest_4286	0.35	-1.1
4,478,999	-		Psest_4286	0.35	+0.3
4,478,999	-		Psest_4286	0.35	-1.6
4,478,999	-		Psest_4286	0.35	-1.4
4,478,999	-		Psest_4286	0.35	+0.0
4,478,999	-		Psest_4286	0.35	-2.0
4,478,999	-		Psest_4286	0.35	-1.2
4,478,999	-		Psest_4286	0.35	-2.7
4,478,999	-		Psest_4286	0.35	+1.4
4,478,999	-		Psest_4286	0.35	+2.3
4,479,322	+		Psest_4286	0.58	+0.0
4,479,322	+		Psest_4286	0.58	+0.6
4,479,322	+		Psest_4286	0.58	-1.9
4,479,322	+		Psest_4286	0.58	+0.3
4,479,322	+		Psest_4286	0.58	+0.4
4,479,322	+		Psest_4286	0.58	+1.2
4,479,322	+		Psest_4286	0.58	+0.8
4,479,322	+		Psest_4286	0.58	-2.1
4,479,323	-		Psest_4286	0.58	-0.4
4,479,323	-		Psest_4286	0.58	+1.8
4,479,323	-		Psest_4286	0.58	+1.9
4,479,323	-		Psest_4286	0.58	+1.2
4,479,323	-		Psest_4286	0.58	+0.3
4,479,323	-		Psest_4286	0.58	-0.7
4,479,323	-		Psest_4286	0.58	-2.1