Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0289

Experiment: Def Neomycin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0288 and Psest_0289 are separated by 133 nucleotidesPsest_0289 and Psest_0290 are separated by 67 nucleotides Psest_0288: Psest_0288 - putative DNA modification/repair radical SAM protein, at 303,412 to 304,623 _0288 Psest_0289: Psest_0289 - Predicted membrane protein, at 304,757 to 305,152 _0289 Psest_0290: Psest_0290 - dihydroorotase, multifunctional complex type, at 305,220 to 306,494 _0290 Position (kb) 304 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 303.777 kb on + strand, within Psest_0288at 303.795 kb on - strand, within Psest_0288at 303.875 kb on + strand, within Psest_0288at 303.875 kb on + strand, within Psest_0288at 303.875 kb on + strand, within Psest_0288at 303.876 kb on - strand, within Psest_0288at 303.876 kb on - strand, within Psest_0288at 303.878 kb on + strand, within Psest_0288at 303.878 kb on + strand, within Psest_0288at 303.878 kb on + strand, within Psest_0288at 303.879 kb on - strand, within Psest_0288at 303.879 kb on - strand, within Psest_0288at 303.896 kb on + strand, within Psest_0288at 303.897 kb on - strand, within Psest_0288at 304.205 kb on + strand, within Psest_0288at 304.205 kb on + strand, within Psest_0288at 304.205 kb on + strand, within Psest_0288at 304.206 kb on - strand, within Psest_0288at 304.206 kb on - strand, within Psest_0288at 304.268 kb on + strand, within Psest_0288at 304.269 kb on - strand, within Psest_0288at 304.269 kb on - strand, within Psest_0288at 304.410 kb on - strand, within Psest_0288at 304.421 kb on + strand, within Psest_0288at 304.422 kb on - strand, within Psest_0288at 304.422 kb on - strand, within Psest_0288at 304.577 kb on + strandat 304.577 kb on + strandat 304.577 kb on + strandat 304.577 kb on + strandat 304.578 kb on - strandat 304.639 kb on - strandat 304.639 kb on - strandat 304.639 kb on - strandat 304.639 kb on - strandat 304.651 kb on + strandat 304.651 kb on + strandat 304.652 kb on - strandat 304.652 kb on - strandat 304.657 kb on - strandat 304.657 kb on - strandat 304.774 kb on + strandat 304.774 kb on + strandat 304.775 kb on - strandat 304.791 kb on - strandat 304.832 kb on + strand, within Psest_0289at 304.832 kb on + strand, within Psest_0289at 304.832 kb on + strand, within Psest_0289at 304.833 kb on - strand, within Psest_0289at 304.835 kb on + strand, within Psest_0289at 304.970 kb on + strand, within Psest_0289at 304.971 kb on - strand, within Psest_0289at 304.987 kb on - strand, within Psest_0289at 305.017 kb on - strand, within Psest_0289at 305.017 kb on - strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.028 kb on - strand, within Psest_0289at 305.028 kb on - strand, within Psest_0289at 305.028 kb on - strand, within Psest_0289at 305.057 kb on + strand, within Psest_0289at 305.097 kb on - strand, within Psest_0289at 305.188 kb on + strandat 305.188 kb on + strandat 305.189 kb on - strandat 305.189 kb on - strandat 305.659 kb on - strand, within Psest_0290at 305.987 kb on - strand, within Psest_0290

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Neomycin 0.0008 mg/ml
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303,777 + Psest_0288 0.30 -0.4
303,795 - Psest_0288 0.32 +0.3
303,875 + Psest_0288 0.38 -0.6
303,875 + Psest_0288 0.38 -1.3
303,875 + Psest_0288 0.38 -2.6
303,876 - Psest_0288 0.38 -1.4
303,876 - Psest_0288 0.38 -0.3
303,878 + Psest_0288 0.38 -0.8
303,878 + Psest_0288 0.38 -0.5
303,878 + Psest_0288 0.38 +0.5
303,879 - Psest_0288 0.39 +1.9
303,879 - Psest_0288 0.39 +0.0
303,896 + Psest_0288 0.40 +0.1
303,897 - Psest_0288 0.40 +0.2
304,205 + Psest_0288 0.65 +0.2
304,205 + Psest_0288 0.65 +0.7
304,205 + Psest_0288 0.65 -0.0
304,206 - Psest_0288 0.66 +0.0
304,206 - Psest_0288 0.66 +0.2
304,268 + Psest_0288 0.71 -0.2
304,269 - Psest_0288 0.71 -0.6
304,269 - Psest_0288 0.71 -1.3
304,410 - Psest_0288 0.82 +0.2
304,421 + Psest_0288 0.83 -2.8
304,422 - Psest_0288 0.83 -1.1
304,422 - Psest_0288 0.83 +1.6
304,577 + +1.6
304,577 + +0.8
304,577 + +1.7
304,577 + +0.9
304,578 - +0.1
304,639 - -0.8
304,639 - -2.2
304,639 - -0.3
304,639 - +1.4
304,651 + -1.4
304,651 + -0.3
304,652 - -2.3
304,652 - -2.0
304,657 - -2.0
304,657 - -0.2
304,774 + +2.3
304,774 + +0.2
304,775 - +0.2
304,791 - +0.4
304,832 + Psest_0289 0.19 +0.9
304,832 + Psest_0289 0.19 +0.2
304,832 + Psest_0289 0.19 +1.5
304,833 - Psest_0289 0.19 +0.3
304,835 + Psest_0289 0.20 -2.3
304,970 + Psest_0289 0.54 -0.3
304,971 - Psest_0289 0.54 +0.7
304,987 - Psest_0289 0.58 +0.7
305,017 - Psest_0289 0.66 -1.1
305,017 - Psest_0289 0.66 -1.4
305,027 + Psest_0289 0.68 +0.3
305,027 + Psest_0289 0.68 +1.3
305,027 + Psest_0289 0.68 -0.3
305,027 + Psest_0289 0.68 +1.0
305,027 + Psest_0289 0.68 -0.3
305,027 + Psest_0289 0.68 -0.8
305,027 + Psest_0289 0.68 +0.9
305,027 + Psest_0289 0.68 +0.2
305,027 + Psest_0289 0.68 +1.6
305,027 + Psest_0289 0.68 +1.3
305,028 - Psest_0289 0.68 +0.9
305,028 - Psest_0289 0.68 +1.6
305,028 - Psest_0289 0.68 +2.5
305,057 + Psest_0289 0.76 -0.6
305,097 - Psest_0289 0.86 -1.1
305,188 + -0.3
305,188 + +2.6
305,189 - -2.0
305,189 - +2.3
305,659 - Psest_0290 0.34 -0.3
305,987 - Psest_0290 0.60 -1.6

Or see this region's nucleotide sequence