Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2404

Experiment: Def Neomycin 0.0008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def Neomycin 0.0008 mg/ml
2,556,732	+		Psest_2403	0.51	-1.9
2,556,732	+		Psest_2403	0.51	-1.0
2,556,733	-		Psest_2403	0.51	-0.7
2,557,459	-				+1.1
2,557,517	+				+2.7
2,557,518	-				-0.8
2,557,518	-				+1.1
2,557,659	-		Psest_2404	0.13	+1.1
2,557,820	+		Psest_2404	0.25	+2.2
2,557,820	+		Psest_2404	0.25	-0.2
2,558,006	+		Psest_2404	0.39	+1.5
2,558,007	-		Psest_2404	0.39	+0.7
2,558,007	-		Psest_2404	0.39	-1.1
2,558,007	-		Psest_2404	0.39	+0.0
2,558,049	-		Psest_2404	0.43	+0.5
2,558,253	+		Psest_2404	0.58	-0.5
2,558,254	-		Psest_2404	0.58	+0.8
2,558,300	+		Psest_2404	0.61	+1.7
2,558,300	+		Psest_2404	0.61	+2.7
2,558,300	+		Psest_2404	0.61	+0.1
2,558,300	+		Psest_2404	0.61	+0.4
2,558,301	-		Psest_2404	0.61	+0.9
2,558,301	-		Psest_2404	0.61	+1.6
2,558,598	-		Psest_2404	0.84	+0.7
2,558,723	+				+0.8
2,558,724	-				+2.1
2,558,724	-				+2.5
2,558,745	-				-1.2
2,558,817	+				+2.4
2,558,817	+				-1.1
2,558,817	+				+0.2
2,558,817	+				+2.1
2,558,817	+				-0.9
2,558,817	+				-1.0
2,558,817	+				+1.0
2,558,818	-				+0.5
2,558,818	-				-0.3
2,558,896	+				-0.3
2,558,896	+				+1.7
2,558,896	+				-0.9
2,558,896	+				-0.7
2,558,896	+				+4.1
2,558,897	-				-0.8
2,558,897	-				-2.3
2,558,897	-				+1.1
2,558,931	+				+1.9
2,558,931	+				+1.7
2,558,934	+				-0.6
2,558,934	+				+1.3
2,558,934	+				+2.1
2,558,934	+				+1.3
2,558,934	+				+4.0
2,558,934	+				+0.3
2,558,935	-				-2.0
2,558,935	-				+0.6
2,558,935	-				-0.8
2,558,935	-				-0.8
2,558,935	-				+0.5
2,559,002	-				+1.0
2,559,218	+		Psest_2405	0.24	+0.9
2,559,255	-		Psest_2405	0.29	+1.9
2,559,255	-		Psest_2405	0.29	+1.9
2,559,635	-		Psest_2405	0.79	+0.7