Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1965

Experiment: Def Neomycin 0.0008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def Neomycin 0.0008 mg/ml
2,078,050	+				+1.6
2,078,088	+		Psest_1963	0.19	+0.2
2,078,197	+		Psest_1963	0.54	-1.5
2,078,290	+		Psest_1963	0.84	-0.7
2,078,290	+		Psest_1963	0.84	-0.8
2,078,291	-		Psest_1963	0.85	+1.0
2,078,291	-		Psest_1963	0.85	-0.7
2,078,349	-				-0.6
2,078,375	+				+1.9
2,078,375	+				-0.8
2,078,375	+				-0.8
2,078,376	-				-2.2
2,078,376	-				-1.1
2,078,376	-				-0.4
2,078,378	+				-1.9
2,078,455	+				-1.2
2,078,456	-				-0.2
2,078,456	-				-2.2
2,078,543	+				-0.8
2,078,598	-		Psest_1964	0.13	-0.3
2,078,598	-		Psest_1964	0.13	-0.8
2,078,598	-		Psest_1964	0.13	-1.1
2,078,608	+		Psest_1964	0.16	+1.0
2,078,609	-		Psest_1964	0.16	-0.4
2,078,609	-		Psest_1964	0.16	+1.2
2,078,702	+		Psest_1964	0.39	+1.2
2,078,702	+		Psest_1964	0.39	+0.1
2,078,702	+		Psest_1964	0.39	-1.8
2,078,703	-		Psest_1964	0.40	+0.2
2,078,703	-		Psest_1964	0.40	+1.2
2,078,703	-		Psest_1964	0.40	+0.0
2,078,703	-		Psest_1964	0.40	+0.2
2,078,703	-		Psest_1964	0.40	+0.9
2,078,775	-		Psest_1964	0.57	-0.6
2,078,863	+		Psest_1964	0.79	-2.2
2,078,961	+				+0.1
2,078,961	+				-0.4
2,078,961	+				-0.3
2,078,962	-				-1.5
2,078,962	-				-0.2
2,078,962	-				+0.1
2,078,962	-				-0.7
2,078,962	-				-1.0
2,078,962	-				-2.1
2,078,962	-				-0.8
2,078,962	-				-1.2
2,078,962	-				-1.1
2,079,007	+				+0.3
2,079,065	+		Psest_1965	0.13	-1.4
2,079,066	-		Psest_1965	0.13	-3.2
2,079,080	+		Psest_1965	0.14	-0.3
2,079,164	+		Psest_1965	0.23	-2.2
2,079,164	+		Psest_1965	0.23	-1.5
2,079,164	+		Psest_1965	0.23	-1.7
2,079,164	+		Psest_1965	0.23	+0.2
2,079,164	+		Psest_1965	0.23	-1.1
2,079,165	-		Psest_1965	0.23	-1.6
2,079,165	-		Psest_1965	0.23	-1.1
2,079,195	+		Psest_1965	0.27	-1.3
2,079,195	+		Psest_1965	0.27	-1.3
2,079,237	-		Psest_1965	0.31	-2.9
2,079,400	+		Psest_1965	0.48	+0.8
2,079,742	-		Psest_1965	0.84	+1.8
2,079,927	+				-1.0
2,079,927	+				-1.9
2,079,928	-				-0.7
2,079,928	-				-0.4
2,079,928	-				-0.4
2,079,928	-				-1.0
2,079,928	-				-1.5
2,079,930	+				-0.9
2,079,931	-				-2.6
2,079,931	-				+0.3
2,079,931	-				-0.3
2,079,988	-				-0.9
2,080,069	+		Psest_1966	0.13	-0.6
2,080,070	-		Psest_1966	0.13	+1.7
2,080,071	+		Psest_1966	0.13	+1.7
2,080,071	+		Psest_1966	0.13	-0.5
2,080,071	+		Psest_1966	0.13	+0.1
2,080,072	-		Psest_1966	0.13	+1.5
2,080,072	-		Psest_1966	0.13	-2.5
2,080,072	-		Psest_1966	0.13	-3.5
2,080,072	-		Psest_1966	0.13	-1.4
2,080,072	-		Psest_1966	0.13	-1.2
2,080,072	-		Psest_1966	0.13	+0.8
2,080,105	-		Psest_1966	0.16	+0.1
2,080,107	+		Psest_1966	0.16	-0.3
2,080,107	+		Psest_1966	0.16	-0.7
2,080,107	+		Psest_1966	0.16	-0.0
2,080,107	+		Psest_1966	0.16	+0.1
2,080,107	+		Psest_1966	0.16	+0.1
2,080,107	+		Psest_1966	0.16	-1.3
2,080,107	+		Psest_1966	0.16	+0.2
2,080,107	+		Psest_1966	0.16	+0.1
2,080,107	+		Psest_1966	0.16	+0.5
2,080,108	-		Psest_1966	0.16	+1.4
2,080,108	-		Psest_1966	0.16	-0.3
2,080,108	-		Psest_1966	0.16	-2.4
2,080,108	-		Psest_1966	0.16	+0.2
2,080,108	-		Psest_1966	0.16	+0.1
2,080,108	-		Psest_1966	0.16	-0.5
2,080,108	-		Psest_1966	0.16	-1.3
2,080,108	-		Psest_1966	0.16	+0.4
2,080,108	-		Psest_1966	0.16	-0.3
2,080,108	-		Psest_1966	0.16	-0.7
2,080,108	-		Psest_1966	0.16	-1.3
2,080,112	-		Psest_1966	0.17	-0.9
2,080,179	+		Psest_1966	0.22	-1.2
2,080,179	+		Psest_1966	0.22	-2.3
2,080,180	-		Psest_1966	0.22	+1.8
2,080,216	+		Psest_1966	0.25	+0.2
2,080,269	+		Psest_1966	0.29	-0.0
2,080,270	-		Psest_1966	0.29	-0.1
2,080,287	+		Psest_1966	0.30	+0.3
2,080,287	+		Psest_1966	0.30	-0.2
2,080,287	+		Psest_1966	0.30	-1.1
2,080,288	-		Psest_1966	0.30	+0.7
2,080,320	+		Psest_1966	0.33	+1.0
2,080,320	+		Psest_1966	0.33	-2.2
2,080,320	+		Psest_1966	0.33	+0.2
2,080,332	+		Psest_1966	0.34	-2.1
2,080,468	-		Psest_1966	0.44	-1.0
2,080,468	-		Psest_1966	0.44	+0.6
2,080,519	+		Psest_1966	0.48	+0.5
2,080,520	-		Psest_1966	0.48	+0.4
2,080,697	+		Psest_1966	0.62	+0.7
2,080,705	+		Psest_1966	0.63	+0.5
2,080,706	-		Psest_1966	0.63	-0.1
2,080,802	+		Psest_1966	0.70	-1.6
2,080,802	+		Psest_1966	0.70	+1.5
2,080,803	-		Psest_1966	0.70	-0.0
2,080,831	+		Psest_1966	0.73	-0.4
2,080,836	+		Psest_1966	0.73	-0.8
2,080,837	-		Psest_1966	0.73	-0.1