Experiment: Def Neomycin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0013 and Psest_0014 are separated by 26 nucleotides Psest_0014 and Psest_0015 are separated by 25 nucleotides Psest_0015 and Psest_0016 are separated by 146 nucleotides Psest_0016 and Psest_0017 overlap by 4 nucleotides Psest_0017 and Psest_0018 overlap by 4 nucleotides
Psest_0013: Psest_0013 - Lauroyl/myristoyl acyltransferase, at 15,128 to 16,015
_0013
Psest_0014: Psest_0014 - PilZ domain., at 16,042 to 16,308
_0014
Psest_0015: Psest_0015 - Tetratricopeptide repeat., at 16,334 to 16,651
_0015
Psest_0016: Psest_0016 - ectoine/hydroxyectoine ABC transporter, ATP-binding protein, at 16,798 to 17,634
_0016
Psest_0017: Psest_0017 - ectoine/hydroxyectoine ABC transporter, permease protein EhuD, at 17,631 to 18,290
_0017
Psest_0018: Psest_0018 - ectoine/hydroxyectoine ABC transporter, permease protein EhuC, at 18,287 to 18,946
_0018
Position (kb) 16
17
18 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.944 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 16.041 kb on + strand at 16.042 kb on - strand at 16.042 kb on - strand at 16.156 kb on + strand, within Psest_0014 at 16.156 kb on + strand, within Psest_0014 at 16.156 kb on + strand, within Psest_0014 at 16.156 kb on + strand, within Psest_0014 at 16.157 kb on - strand, within Psest_0014 at 16.181 kb on + strand, within Psest_0014 at 16.181 kb on + strand, within Psest_0014 at 16.182 kb on - strand, within Psest_0014 at 16.506 kb on + strand, within Psest_0015 at 16.575 kb on + strand, within Psest_0015 at 16.575 kb on + strand, within Psest_0015 at 16.575 kb on + strand, within Psest_0015 at 16.576 kb on - strand, within Psest_0015 at 16.698 kb on + strand at 16.699 kb on - strand at 16.733 kb on + strand at 16.734 kb on - strand at 16.734 kb on - strand at 16.734 kb on - strand at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.416 kb on + strand, within Psest_0016 at 17.417 kb on - strand, within Psest_0016 at 17.628 kb on + strand at 17.629 kb on - strand at 17.629 kb on - strand at 17.833 kb on + strand, within Psest_0017 at 17.833 kb on + strand, within Psest_0017 at 17.833 kb on + strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.984 kb on - strand, within Psest_0017 at 17.992 kb on + strand, within Psest_0017 at 18.046 kb on + strand, within Psest_0017 at 18.047 kb on - strand, within Psest_0017 at 18.057 kb on + strand, within Psest_0017 at 18.057 kb on + strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.073 kb on + strand, within Psest_0017 at 18.073 kb on + strand, within Psest_0017 at 18.074 kb on - strand, within Psest_0017 at 18.074 kb on - strand, within Psest_0017 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018
Per-strain Table
Position Strand Gene LocusTag Fraction Def Neomycin 0.0008 mg/ml remove 15,878 + Psest_0013 0.84 -2.5 15,878 + Psest_0013 0.84 -2.3 15,878 + Psest_0013 0.84 +0.7 15,878 + Psest_0013 0.84 -3.1 15,878 + Psest_0013 0.84 -0.6 15,878 + Psest_0013 0.84 -3.6 15,878 + Psest_0013 0.84 -2.9 15,878 + Psest_0013 0.84 -1.9 15,878 + Psest_0013 0.84 -0.4 15,878 + Psest_0013 0.84 -2.1 15,878 + Psest_0013 0.84 -0.9 15,879 - Psest_0013 0.85 -1.8 15,879 - Psest_0013 0.85 -0.3 15,879 - Psest_0013 0.85 -2.5 15,879 - Psest_0013 0.85 -2.0 15,879 - Psest_0013 0.85 -1.6 15,879 - Psest_0013 0.85 -3.3 15,879 - Psest_0013 0.85 -0.6 15,879 - Psest_0013 0.85 -0.9 15,932 + -2.2 15,932 + -3.4 15,932 + -2.2 15,933 - +0.7 15,933 - -1.8 15,933 - -2.2 15,933 - -2.8 15,944 + +0.1 15,956 + -2.3 15,956 + -1.3 15,956 + -1.3 15,956 + -2.3 15,956 + -1.9 15,956 + -0.6 15,956 + -2.6 15,956 + -2.3 15,956 + -3.9 15,956 + -0.9 15,956 + -1.8 15,956 + -0.3 15,956 + -0.3 15,956 + -4.2 15,956 + -1.0 15,956 + -1.3 15,956 + -0.6 15,957 - -0.6 15,957 - -1.3 15,957 - -2.6 15,957 - +0.1 15,957 - -2.0 15,957 - -1.5 15,957 - +0.7 16,041 + +0.1 16,042 - -1.5 16,042 - +1.0 16,156 + Psest_0014 0.43 +0.9 16,156 + Psest_0014 0.43 -0.9 16,156 + Psest_0014 0.43 +0.0 16,156 + Psest_0014 0.43 -0.9 16,157 - Psest_0014 0.43 +0.0 16,181 + Psest_0014 0.52 +3.0 16,181 + Psest_0014 0.52 +0.2 16,182 - Psest_0014 0.52 +3.7 16,506 + Psest_0015 0.54 +0.2 16,575 + Psest_0015 0.76 -1.3 16,575 + Psest_0015 0.76 +0.4 16,575 + Psest_0015 0.76 -2.7 16,576 - Psest_0015 0.76 -1.1 16,698 + +0.3 16,699 - +1.3 16,733 + +0.5 16,734 - -0.4 16,734 - -1.7 16,734 - +0.5 17,287 + Psest_0016 0.58 -0.3 17,287 + Psest_0016 0.58 +0.1 17,287 + Psest_0016 0.58 -1.9 17,287 + Psest_0016 0.58 -3.0 17,287 + Psest_0016 0.58 +1.2 17,287 + Psest_0016 0.58 -1.3 17,287 + Psest_0016 0.58 -0.9 17,288 - Psest_0016 0.59 -1.6 17,288 - Psest_0016 0.59 +0.3 17,288 - Psest_0016 0.59 -2.5 17,416 + Psest_0016 0.74 -2.4 17,417 - Psest_0016 0.74 -1.1 17,628 + +0.6 17,629 - -0.5 17,629 - -1.6 17,833 + Psest_0017 0.31 +0.1 17,833 + Psest_0017 0.31 +0.7 17,833 + Psest_0017 0.31 -1.5 17,834 - Psest_0017 0.31 -1.0 17,834 - Psest_0017 0.31 -0.1 17,834 - Psest_0017 0.31 +2.0 17,834 - Psest_0017 0.31 +0.4 17,983 + Psest_0017 0.53 -1.9 17,983 + Psest_0017 0.53 +0.2 17,983 + Psest_0017 0.53 +0.6 17,983 + Psest_0017 0.53 +1.3 17,984 - Psest_0017 0.53 +1.0 17,992 + Psest_0017 0.55 -0.5 18,046 + Psest_0017 0.63 +0.7 18,047 - Psest_0017 0.63 +0.6 18,057 + Psest_0017 0.65 -0.0 18,057 + Psest_0017 0.65 +0.2 18,058 - Psest_0017 0.65 -0.1 18,058 - Psest_0017 0.65 +0.2 18,058 - Psest_0017 0.65 +1.7 18,058 - Psest_0017 0.65 -0.2 18,061 + Psest_0017 0.65 -1.3 18,061 + Psest_0017 0.65 +0.3 18,061 + Psest_0017 0.65 +1.6 18,061 + Psest_0017 0.65 +0.5 18,062 - Psest_0017 0.65 +0.4 18,062 - Psest_0017 0.65 -1.4 18,062 - Psest_0017 0.65 +1.4 18,062 - Psest_0017 0.65 +1.1 18,062 - Psest_0017 0.65 -0.1 18,062 - Psest_0017 0.65 +0.0 18,062 - Psest_0017 0.65 +0.4 18,062 - Psest_0017 0.65 -0.0 18,062 - Psest_0017 0.65 -1.4 18,062 - Psest_0017 0.65 +0.1 18,062 - Psest_0017 0.65 +0.7 18,062 - Psest_0017 0.65 +0.1 18,073 + Psest_0017 0.67 +1.5 18,073 + Psest_0017 0.67 +0.5 18,074 - Psest_0017 0.67 -0.2 18,074 - Psest_0017 0.67 -1.6 18,375 + Psest_0018 0.13 +0.6 18,375 + Psest_0018 0.13 -0.0 18,375 + Psest_0018 0.13 -0.9 18,375 + Psest_0018 0.13 -0.5 18,375 + Psest_0018 0.13 -1.0 18,375 + Psest_0018 0.13 -0.4 18,375 + Psest_0018 0.13 +2.5 18,375 + Psest_0018 0.13 -0.4 18,376 - Psest_0018 0.13 -0.8 18,376 - Psest_0018 0.13 -1.5 18,376 - Psest_0018 0.13 -1.2 18,376 - Psest_0018 0.13 -0.0 18,376 - Psest_0018 0.13 +1.2 18,376 - Psest_0018 0.13 -1.5
Or see this region's nucleotide sequence