Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1512

Experiment: Def Neomycin 0.0008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def Neomycin 0.0008 mg/ml
1,611,072	-		Psest_1510	0.86	-0.4
1,611,072	-		Psest_1510	0.86	-0.1
1,611,072	-		Psest_1510	0.86	+1.0
1,611,142	+				+0.2
1,611,142	+				+1.8
1,611,143	-				+1.7
1,611,143	-				-1.7
1,611,288	+				+0.0
1,611,302	+				+1.0
1,611,302	+				-1.6
1,611,342	+				-0.3
1,611,342	+				-1.3
1,611,342	+				+3.8
1,611,342	+				-0.1
1,611,342	+				+0.7
1,611,342	+				+0.9
1,611,342	+				-1.3
1,611,342	+				+1.3
1,611,342	+				-0.3
1,611,342	+				-0.7
1,611,342	+				+1.9
1,611,342	+				-1.1
1,611,342	+				-0.3
1,611,342	+				-0.5
1,611,343	-				-1.3
1,611,343	-				+0.1
1,611,343	-				-1.0
1,611,343	-				-1.6
1,611,343	-				+0.7
1,611,343	-				-1.1
1,611,346	+				-0.9
1,611,347	-				+1.3
1,611,347	-				-0.3
1,611,347	-				-1.7
1,611,406	+		Psest_1511	0.11	-0.8
1,611,407	-		Psest_1511	0.12	-1.9
1,611,407	-		Psest_1511	0.12	-0.2
1,611,421	+		Psest_1511	0.17	-3.3
1,611,422	-		Psest_1511	0.17	-3.1
1,611,422	-		Psest_1511	0.17	-3.3
1,611,422	-		Psest_1511	0.17	-2.1
1,611,422	-		Psest_1511	0.17	-2.2
1,611,422	-		Psest_1511	0.17	-2.5
1,611,422	-		Psest_1511	0.17	-4.5
1,611,422	-		Psest_1511	0.17	-3.3
1,611,422	-		Psest_1511	0.17	-3.8
1,611,604	-				-2.8
1,611,609	+				-2.6
1,611,648	+				-1.9
1,611,648	+				-1.0
1,611,648	+				-1.1
1,611,648	+				+1.1
1,611,649	-				-0.9
1,611,649	-				+0.9
1,611,649	-				-0.4
1,611,661	+				-0.4
1,611,661	+				-1.3
1,611,661	+				+1.8
1,611,661	+				-0.5
1,611,684	+				-1.4
1,611,685	-				-3.8
1,612,039	+		Psest_1512	0.36	-1.1
1,612,039	+		Psest_1512	0.36	+1.9
1,612,040	-		Psest_1512	0.36	-0.1
1,612,143	+		Psest_1512	0.46	+0.7
1,612,143	+		Psest_1512	0.46	-3.8
1,612,143	+		Psest_1512	0.46	+0.4
1,612,144	-		Psest_1512	0.46	+1.1
1,612,144	-		Psest_1512	0.46	-1.9
1,612,144	-		Psest_1512	0.46	-2.0
1,612,284	+		Psest_1512	0.59	+1.9
1,612,284	+		Psest_1512	0.59	-0.2
1,612,284	+		Psest_1512	0.59	+1.1
1,612,284	+		Psest_1512	0.59	-2.1
1,612,284	+		Psest_1512	0.59	-1.0
1,612,284	+		Psest_1512	0.59	-2.7
1,612,284	+		Psest_1512	0.59	-1.6
1,612,284	+		Psest_1512	0.59	-2.6
1,612,284	+		Psest_1512	0.59	-1.6
1,612,285	-		Psest_1512	0.59	-0.8
1,612,285	-		Psest_1512	0.59	-1.6
1,612,285	-		Psest_1512	0.59	-1.6
1,612,285	-		Psest_1512	0.59	-1.9
1,612,362	+		Psest_1512	0.66	+0.7
1,612,362	+		Psest_1512	0.66	+0.9
1,612,362	+		Psest_1512	0.66	-1.7
1,612,362	+		Psest_1512	0.66	-1.0
1,612,363	-		Psest_1512	0.66	-0.0
1,612,363	-		Psest_1512	0.66	-0.5
1,612,411	-		Psest_1512	0.71	+0.9
1,612,411	-		Psest_1512	0.71	-0.9
1,612,488	+		Psest_1512	0.78	-0.7
1,612,489	-		Psest_1512	0.78	+3.2
1,612,588	+		Psest_1512	0.87	-2.0
1,612,588	+		Psest_1512	0.87	-0.9
1,612,588	+		Psest_1512	0.87	-0.3
1,612,588	+		Psest_1512	0.87	+0.1
1,612,588	+		Psest_1512	0.87	+0.6
1,612,892	-		Psest_1513	0.28	-1.6
1,612,892	-		Psest_1513	0.28	+0.6
1,612,903	+		Psest_1513	0.30	-1.4
1,612,904	-		Psest_1513	0.30	+1.1
1,613,100	-		Psest_1513	0.72	-0.5
1,613,131	+		Psest_1513	0.78	+1.2
1,613,131	+		Psest_1513	0.78	-2.9
1,613,132	-		Psest_1513	0.78	-1.2
1,613,132	-		Psest_1513	0.78	-0.2
1,613,132	-		Psest_1513	0.78	-2.4
1,613,132	-		Psest_1513	0.78	-0.7
1,613,132	-		Psest_1513	0.78	-1.5
1,613,132	-		Psest_1513	0.78	+1.3
1,613,132	-		Psest_1513	0.78	+0.5
1,613,132	-		Psest_1513	0.78	+0.9
1,613,132	-		Psest_1513	0.78	-0.3
1,613,132	-		Psest_1513	0.78	+0.5
1,613,132	-		Psest_1513	0.78	-0.4
1,613,132	-		Psest_1513	0.78	+2.8
1,613,417	-		Psest_1514	0.29	+1.3
1,613,512	+		Psest_1514	0.46	-1.5
1,613,512	+		Psest_1514	0.46	-1.7
1,613,512	+		Psest_1514	0.46	+1.3
1,613,512	+		Psest_1514	0.46	-0.5
1,613,512	+		Psest_1514	0.46	+0.4
1,613,513	-		Psest_1514	0.46	+1.3
1,613,513	-		Psest_1514	0.46	-1.0
1,613,513	-		Psest_1514	0.46	-1.7
1,613,513	-		Psest_1514	0.46	+1.0
1,613,513	-		Psest_1514	0.46	-0.4
1,613,521	+		Psest_1514	0.47	+0.0
1,613,522	-		Psest_1514	0.47	-0.8