Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0778

Experiment: Def Neomycin 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0776 and Psest_0777 are separated by 4 nucleotidesPsest_0777 and Psest_0778 are separated by 84 nucleotidesPsest_0778 and Psest_0779 are separated by 195 nucleotides Psest_0776: Psest_0776 - FOG: Ankyrin repeat, at 845,785 to 846,339 _0776 Psest_0777: Psest_0777 - cyanate hydratase, at 846,344 to 846,793 _0777 Psest_0778: Psest_0778 - Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin, at 846,878 to 847,639 _0778 Psest_0779: Psest_0779 - tyrosine aminotransferase (EC 2.6.1.57) (from data), at 847,835 to 849,031 _0779 Position (kb) 846 847 848Strain fitness (log2 ratio) -2 -1 0 1 2at 845.906 kb on - strand, within Psest_0776at 845.998 kb on + strand, within Psest_0776at 845.999 kb on - strand, within Psest_0776at 846.022 kb on + strand, within Psest_0776at 846.023 kb on - strand, within Psest_0776at 846.023 kb on - strand, within Psest_0776at 846.023 kb on - strand, within Psest_0776at 846.211 kb on + strand, within Psest_0776at 846.211 kb on + strand, within Psest_0776at 846.212 kb on + strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.212 kb on - strand, within Psest_0776at 846.348 kb on + strandat 846.348 kb on + strandat 846.349 kb on - strandat 846.519 kb on + strand, within Psest_0777at 846.528 kb on + strand, within Psest_0777at 846.573 kb on + strand, within Psest_0777at 846.574 kb on - strand, within Psest_0777at 846.574 kb on - strand, within Psest_0777at 846.743 kb on + strand, within Psest_0777at 846.743 kb on + strand, within Psest_0777at 846.743 kb on + strand, within Psest_0777at 846.743 kb on + strand, within Psest_0777at 846.743 kb on + strand, within Psest_0777at 846.744 kb on - strand, within Psest_0777at 846.744 kb on - strand, within Psest_0777at 846.885 kb on + strandat 846.885 kb on + strandat 846.973 kb on - strand, within Psest_0778at 846.973 kb on - strand, within Psest_0778at 847.020 kb on - strand, within Psest_0778at 847.230 kb on + strand, within Psest_0778at 847.230 kb on + strand, within Psest_0778at 847.230 kb on + strand, within Psest_0778at 847.231 kb on - strand, within Psest_0778at 847.375 kb on + strand, within Psest_0778at 847.671 kb on + strandat 847.671 kb on + strandat 847.671 kb on + strandat 847.671 kb on + strandat 847.671 kb on + strandat 847.672 kb on - strandat 847.672 kb on - strandat 847.672 kb on - strandat 847.836 kb on + strandat 847.836 kb on + strandat 847.837 kb on - strandat 847.929 kb on + strandat 847.929 kb on + strandat 847.929 kb on + strandat 847.929 kb on + strandat 847.929 kb on + strandat 847.930 kb on - strandat 847.959 kb on - strand, within Psest_0779at 847.983 kb on + strand, within Psest_0779at 847.983 kb on + strand, within Psest_0779at 847.983 kb on + strand, within Psest_0779at 847.984 kb on - strand, within Psest_0779at 848.584 kb on - strand, within Psest_0779at 848.584 kb on - strand, within Psest_0779

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Neomycin 0.0002 mg/ml
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845,906 - Psest_0776 0.22 +1.7
845,998 + Psest_0776 0.38 +0.7
845,999 - Psest_0776 0.39 +0.7
846,022 + Psest_0776 0.43 -0.6
846,023 - Psest_0776 0.43 -0.5
846,023 - Psest_0776 0.43 -0.3
846,023 - Psest_0776 0.43 +1.3
846,211 + Psest_0776 0.77 +0.7
846,211 + Psest_0776 0.77 +0.5
846,212 + Psest_0776 0.77 +1.3
846,212 - Psest_0776 0.77 -1.7
846,212 - Psest_0776 0.77 -0.2
846,212 - Psest_0776 0.77 -0.4
846,212 - Psest_0776 0.77 -2.0
846,212 - Psest_0776 0.77 +2.4
846,348 + +0.7
846,348 + +0.3
846,349 - +0.8
846,519 + Psest_0777 0.39 -0.1
846,528 + Psest_0777 0.41 -0.5
846,573 + Psest_0777 0.51 -0.4
846,574 - Psest_0777 0.51 -0.7
846,574 - Psest_0777 0.51 -0.6
846,743 + Psest_0777 0.89 +0.7
846,743 + Psest_0777 0.89 -0.3
846,743 + Psest_0777 0.89 +0.0
846,743 + Psest_0777 0.89 +0.3
846,743 + Psest_0777 0.89 -1.0
846,744 - Psest_0777 0.89 +0.6
846,744 - Psest_0777 0.89 -0.3
846,885 + +0.7
846,885 + +0.1
846,973 - Psest_0778 0.12 -1.3
846,973 - Psest_0778 0.12 -0.7
847,020 - Psest_0778 0.19 +1.5
847,230 + Psest_0778 0.46 -1.5
847,230 + Psest_0778 0.46 -0.7
847,230 + Psest_0778 0.46 -1.5
847,231 - Psest_0778 0.46 -1.7
847,375 + Psest_0778 0.65 +1.7
847,671 + -0.3
847,671 + +0.7
847,671 + +1.7
847,671 + +0.3
847,671 + -0.3
847,672 - -0.9
847,672 - +0.7
847,672 - -0.1
847,836 + +2.7
847,836 + -0.5
847,837 - -0.8
847,929 + +1.7
847,929 + -0.1
847,929 + +0.5
847,929 + +1.7
847,929 + +2.0
847,930 - -0.3
847,959 - Psest_0779 0.10 +0.2
847,983 + Psest_0779 0.12 +1.7
847,983 + Psest_0779 0.12 -0.3
847,983 + Psest_0779 0.12 -0.1
847,984 - Psest_0779 0.12 -0.9
848,584 - Psest_0779 0.63 +1.1
848,584 - Psest_0779 0.63 +0.7

Or see this region's nucleotide sequence