Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3351

Experiment: Def Neomycin 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def Neomycin 0.0002 mg/ml
3,518,811	+		Psest_3350	0.64	+0.4
3,518,811	+		Psest_3350	0.64	+0.0
3,518,812	-		Psest_3350	0.64	-0.2
3,518,812	-		Psest_3350	0.64	+0.5
3,518,812	-		Psest_3350	0.64	+0.5
3,518,988	+		Psest_3350	0.79	+0.1
3,518,989	-		Psest_3350	0.79	-0.3
3,518,989	-		Psest_3350	0.79	-1.0
3,518,989	-		Psest_3350	0.79	-1.2
3,519,069	+		Psest_3350	0.86	+0.0
3,519,069	+		Psest_3350	0.86	-2.0
3,519,069	+		Psest_3350	0.86	-0.4
3,519,070	-		Psest_3350	0.86	-0.5
3,519,070	-		Psest_3350	0.86	-1.8
3,519,072	+		Psest_3350	0.86	+0.1
3,519,072	+		Psest_3350	0.86	-0.4
3,519,072	+		Psest_3350	0.86	+1.4
3,519,072	+		Psest_3350	0.86	-0.3
3,519,111	+		Psest_3350	0.90	-0.7
3,519,207	+				-0.5
3,519,207	+				-2.3
3,519,207	+				-0.6
3,519,207	+				+0.0
3,519,207	+				-0.6
3,519,207	+				+0.6
3,519,207	+				-0.4
3,519,207	+				-1.0
3,519,208	-				-1.6
3,519,329	+				-1.0
3,519,330	-				+1.0
3,519,330	-				-0.0
3,519,380	-				-0.4
3,519,429	+				-0.6
3,519,446	+				+0.0
3,519,446	+				-0.2
3,519,446	+				+1.2
3,519,446	+				-0.7
3,519,447	-				-2.0
3,519,447	-				-0.2
3,519,447	-				-1.0
3,519,447	-				-1.4
3,519,447	-				+0.0
3,519,447	-				-1.1
3,519,609	+				+0.0
3,519,927	+		Psest_3351	0.18	+0.3
3,519,927	+		Psest_3351	0.18	+0.0
3,519,928	-		Psest_3351	0.18	-1.0
3,520,049	+		Psest_3351	0.26	-0.1
3,520,177	-		Psest_3351	0.34	-1.2
3,520,177	-		Psest_3351	0.34	-0.7
3,520,194	+		Psest_3351	0.35	-0.8
3,520,194	+		Psest_3351	0.35	-0.4
3,520,194	+		Psest_3351	0.35	+0.6
3,520,195	-		Psest_3351	0.35	-0.3
3,520,195	-		Psest_3351	0.35	-1.3
3,520,206	+		Psest_3351	0.36	+0.6
3,520,296	+		Psest_3351	0.42	+0.0
3,520,583	+		Psest_3351	0.60	-1.4
3,520,583	+		Psest_3351	0.60	-1.2
3,520,584	-		Psest_3351	0.60	-1.2
3,520,584	-		Psest_3351	0.60	+1.6
3,520,584	-		Psest_3351	0.60	+0.6
3,520,584	-		Psest_3351	0.60	-1.2
3,520,600	-		Psest_3351	0.61	+0.0
3,520,704	+		Psest_3351	0.67	-0.1
3,520,704	+		Psest_3351	0.67	-1.7
3,520,705	-		Psest_3351	0.67	+0.6
3,520,995	+		Psest_3351	0.86	+1.6
3,520,995	+		Psest_3351	0.86	+2.6
3,520,995	+		Psest_3351	0.86	-0.3
3,520,995	+		Psest_3351	0.86	-0.4
3,520,995	+		Psest_3351	0.86	-0.4
3,520,995	+		Psest_3351	0.86	-1.0
3,520,995	+		Psest_3351	0.86	-0.7
3,520,995	+		Psest_3351	0.86	-1.6
3,520,995	+		Psest_3351	0.86	+0.3
3,520,996	-		Psest_3351	0.86	+0.6
3,520,996	-		Psest_3351	0.86	-1.2
3,520,996	-		Psest_3351	0.86	-0.4
3,520,996	-		Psest_3351	0.86	-1.0
3,521,133	+				-1.4
3,521,133	+				-1.4
3,521,226	-				+0.6
3,521,226	-				-0.0
3,521,382	+		Psest_3352	0.31	+0.2
3,521,382	+		Psest_3352	0.31	+0.9
3,521,382	+		Psest_3352	0.31	+0.4
3,521,382	+		Psest_3352	0.31	-0.2
3,521,382	+		Psest_3352	0.31	+0.1
3,521,382	+		Psest_3352	0.31	+1.6
3,521,382	+		Psest_3352	0.31	-1.9
3,521,383	-		Psest_3352	0.32	-0.1
3,521,383	-		Psest_3352	0.32	-0.3
3,521,383	-		Psest_3352	0.32	+0.4
3,521,383	-		Psest_3352	0.32	-1.1
3,521,383	-		Psest_3352	0.32	+0.6
3,521,383	-		Psest_3352	0.32	-0.7
3,521,462	+		Psest_3352	0.56	-1.0
3,521,462	+		Psest_3352	0.56	-0.8
3,521,462	+		Psest_3352	0.56	+0.1
3,521,462	+		Psest_3352	0.56	-1.0
3,521,462	+		Psest_3352	0.56	-0.1
3,521,463	-		Psest_3352	0.56	-0.6
3,521,463	-		Psest_3352	0.56	-0.2
3,521,463	-		Psest_3352	0.56	+0.1
3,521,556	+		Psest_3352	0.85	+0.3
3,521,557	-		Psest_3352	0.85	-0.1
3,521,658	+				-0.4
3,521,658	+				-0.6
3,521,658	+				-0.5
3,521,659	-				-0.4
3,521,659	-				+0.6
3,521,682	+				+0.0
3,521,682	+				-1.4
3,521,740	+				-0.1
3,521,740	+				-1.0
3,521,740	+				+0.1
3,521,740	+				-0.2
3,521,740	+				+1.0
3,521,740	+				-1.0
3,521,740	+				-0.4
3,521,741	-				-0.4
3,521,741	-				-0.6
3,521,741	-				+1.9
3,521,741	-				+0.4
3,521,741	-				+1.1
3,521,741	-				+0.4
3,521,785	+				-0.7
3,521,786	-				-0.3
3,521,786	-				+0.6
3,522,103	+		Psest_3353	0.24	+0.2
3,522,103	+		Psest_3353	0.24	+0.3
3,522,139	+		Psest_3353	0.26	+0.3
3,522,139	+		Psest_3353	0.26	-0.1
3,522,196	-		Psest_3353	0.29	-0.4