Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1452

Experiment: Def Neomycin 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def Neomycin 0.0002 mg/ml
1,559,302	-				-0.4
1,559,302	-				-2.0
1,559,302	-				+1.6
1,559,302	-				+0.6
1,559,302	-				-2.2
1,559,302	-				-3.4
1,559,302	-				-0.4
1,559,401	-				+1.0
1,559,452	+				+0.2
1,559,474	+				-0.6
1,559,474	+				-0.2
1,559,474	+				-0.2
1,559,475	-				-0.2
1,559,475	-				-0.7
1,559,475	-				-0.2
1,559,476	+				+0.4
1,559,476	+				+0.1
1,559,476	+				+1.1
1,559,476	+				+2.3
1,559,476	+				+1.0
1,559,476	+				+0.9
1,559,476	+				+1.0
1,559,476	+				-1.0
1,559,476	+				-0.8
1,559,477	-				+0.2
1,559,477	-				+0.1
1,559,743	+		Psest_1451	0.49	+1.6
1,559,743	+		Psest_1451	0.49	+0.3
1,559,743	+		Psest_1451	0.49	-0.1
1,559,743	+		Psest_1451	0.49	+0.6
1,559,744	-		Psest_1451	0.50	-0.5
1,559,744	-		Psest_1451	0.50	-1.6
1,560,105	+				-3.0
1,560,105	+				-0.4
1,560,106	-				-2.3
1,560,106	-				-1.8
1,560,124	+				-2.4
1,560,128	+				-2.6
1,560,129	-				-1.4
1,560,326	+				-1.9
1,560,326	+				-1.6
1,560,326	+				-2.2
1,560,326	+				-3.7
1,560,326	+				-0.4
1,560,326	+				-3.8
1,560,327	-				-0.0
1,560,513	+		Psest_1452	0.13	-0.0
1,560,513	+		Psest_1452	0.13	-2.2
1,560,568	+		Psest_1452	0.16	-1.8
1,560,568	+		Psest_1452	0.16	-2.6
1,560,569	-		Psest_1452	0.16	-3.2
1,560,575	-		Psest_1452	0.16	-3.1
1,560,700	+		Psest_1452	0.22	-0.8
1,560,700	+		Psest_1452	0.22	-2.2
1,560,700	+		Psest_1452	0.22	-2.2
1,560,700	+		Psest_1452	0.22	-1.9
1,560,700	+		Psest_1452	0.22	-2.4
1,560,700	+		Psest_1452	0.22	-2.8
1,560,700	+		Psest_1452	0.22	-2.3
1,560,700	+		Psest_1452	0.22	-0.0
1,560,701	-		Psest_1452	0.22	-0.8
1,560,701	-		Psest_1452	0.22	-3.9
1,560,715	-		Psest_1452	0.22	-1.9
1,560,782	-		Psest_1452	0.25	-2.5
1,560,782	-		Psest_1452	0.25	+0.6
1,560,896	-		Psest_1452	0.30	-2.0
1,560,896	-		Psest_1452	0.30	-2.4
1,560,896	-		Psest_1452	0.30	-2.8
1,560,896	-		Psest_1452	0.30	-3.3
1,560,940	+		Psest_1452	0.32	-1.4
1,560,940	+		Psest_1452	0.32	-0.9
1,560,941	-		Psest_1452	0.32	-1.6
1,560,941	-		Psest_1452	0.32	+0.6
1,560,941	-		Psest_1452	0.32	-2.2
1,560,941	-		Psest_1452	0.32	-0.4
1,561,060	+		Psest_1452	0.37	-2.0
1,561,060	+		Psest_1452	0.37	-2.2
1,561,060	+		Psest_1452	0.37	-2.2
1,561,061	-		Psest_1452	0.37	-0.4
1,561,570	+		Psest_1452	0.59	-3.2
1,561,570	+		Psest_1452	0.59	-1.6
1,561,570	+		Psest_1452	0.59	-1.2
1,561,570	+		Psest_1452	0.59	-2.6
1,561,570	+		Psest_1452	0.59	-3.1
1,561,570	+		Psest_1452	0.59	-1.0
1,561,570	+		Psest_1452	0.59	-0.8
1,561,571	-		Psest_1452	0.59	-1.8
1,561,571	-		Psest_1452	0.59	-1.0
1,561,571	-		Psest_1452	0.59	-2.9
1,561,571	-		Psest_1452	0.59	-3.1
1,561,571	-		Psest_1452	0.59	-2.9
1,561,571	-		Psest_1452	0.59	-0.4
1,561,572	+		Psest_1452	0.59	-1.2
1,561,572	+		Psest_1452	0.59	-1.8
1,561,573	-		Psest_1452	0.59	-0.0
1,561,600	+		Psest_1452	0.61	-1.4
1,561,600	+		Psest_1452	0.61	-0.4
1,561,600	+		Psest_1452	0.61	-2.2
1,561,667	+		Psest_1452	0.63	-2.0
1,561,668	-		Psest_1452	0.63	-2.0
1,561,668	-		Psest_1452	0.63	+1.6
1,561,708	+		Psest_1452	0.65	-1.2
1,561,708	+		Psest_1452	0.65	-0.9
1,561,708	+		Psest_1452	0.65	-2.8
1,561,708	+		Psest_1452	0.65	-2.0
1,561,766	-		Psest_1452	0.68	-1.9
1,561,766	-		Psest_1452	0.68	-3.0
1,561,766	-		Psest_1452	0.68	-0.8
1,561,798	+		Psest_1452	0.69	-0.8
1,562,081	-		Psest_1452	0.81	-0.4
1,562,161	+		Psest_1452	0.85	-0.0
1,562,161	+		Psest_1452	0.85	-2.2
1,562,162	-		Psest_1452	0.85	-1.8
1,562,162	-		Psest_1452	0.85	-1.9
1,562,162	-		Psest_1452	0.85	-1.8
1,562,162	-		Psest_1452	0.85	-2.7
1,562,303	-				-2.9
1,562,723	+		Psest_1453	0.11	+1.3
1,563,080	+		Psest_1453	0.34	-0.9
1,563,143	+		Psest_1453	0.38	-1.6
1,563,143	+		Psest_1453	0.38	+0.8
1,563,143	+		Psest_1453	0.38	-0.0
1,563,143	+		Psest_1453	0.38	-0.4
1,563,143	+		Psest_1453	0.38	+0.4
1,563,144	-		Psest_1453	0.38	+0.9
1,563,144	-		Psest_1453	0.38	+1.2
1,563,209	+		Psest_1453	0.42	+1.0
1,563,258	-		Psest_1453	0.45	-0.1
1,563,258	-		Psest_1453	0.45	+1.9
1,563,345	-		Psest_1453	0.51	+0.3
1,563,345	-		Psest_1453	0.51	+1.2
1,563,345	-		Psest_1453	0.51	+1.2
1,563,345	-		Psest_1453	0.51	+0.6
1,563,362	+		Psest_1453	0.52	-2.0
1,563,362	+		Psest_1453	0.52	-0.4
1,563,363	-		Psest_1453	0.52	+0.2
1,563,363	-		Psest_1453	0.52	-0.3