Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0785

Experiment: Def Lomefloxacin 0.00004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0784 and Psest_0785 are separated by 108 nucleotidesPsest_0785 and Psest_0786 are separated by 324 nucleotides Psest_0784: Psest_0784 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 856,617 to 857,993 _0784 Psest_0785: Psest_0785 - Thioredoxin reductase, at 858,102 to 859,049 _0785 Psest_0786: Psest_0786 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 859,374 to 860,399 _0786 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1 2at 857.182 kb on + strand, within Psest_0784at 857.183 kb on - strand, within Psest_0784at 857.560 kb on + strand, within Psest_0784at 857.560 kb on + strand, within Psest_0784at 857.560 kb on + strand, within Psest_0784at 857.561 kb on - strand, within Psest_0784at 857.561 kb on - strand, within Psest_0784at 857.561 kb on - strand, within Psest_0784at 857.561 kb on - strand, within Psest_0784at 857.564 kb on - strand, within Psest_0784at 857.721 kb on + strand, within Psest_0784at 857.721 kb on + strand, within Psest_0784at 857.721 kb on + strand, within Psest_0784at 857.842 kb on + strand, within Psest_0784at 857.842 kb on + strand, within Psest_0784at 858.020 kb on - strandat 858.020 kb on - strandat 858.020 kb on - strandat 858.020 kb on - strandat 858.021 kb on + strandat 858.021 kb on + strandat 858.021 kb on + strandat 858.021 kb on + strandat 858.021 kb on + strandat 858.022 kb on - strandat 858.022 kb on - strandat 858.022 kb on - strandat 858.022 kb on - strandat 858.022 kb on - strandat 858.022 kb on - strandat 858.027 kb on + strandat 858.027 kb on + strandat 858.104 kb on - strandat 858.104 kb on - strandat 858.152 kb on + strandat 858.353 kb on - strand, within Psest_0785at 858.353 kb on - strand, within Psest_0785at 858.457 kb on + strand, within Psest_0785at 858.581 kb on - strand, within Psest_0785at 858.581 kb on - strand, within Psest_0785at 858.962 kb on - strandat 858.962 kb on - strandat 858.962 kb on - strandat 858.962 kb on - strandat 859.077 kb on + strandat 859.078 kb on - strandat 859.384 kb on + strandat 859.821 kb on + strand, within Psest_0786at 859.821 kb on + strand, within Psest_0786at 859.821 kb on + strand, within Psest_0786at 859.821 kb on + strand, within Psest_0786at 859.821 kb on + strand, within Psest_0786at 859.822 kb on - strand, within Psest_0786at 859.822 kb on - strand, within Psest_0786at 859.822 kb on - strand, within Psest_0786

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Lomefloxacin 0.00004 mM
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857,182 + Psest_0784 0.41 +1.0
857,183 - Psest_0784 0.41 -0.2
857,560 + Psest_0784 0.68 +0.3
857,560 + Psest_0784 0.68 +0.1
857,560 + Psest_0784 0.68 -1.4
857,561 - Psest_0784 0.69 -0.1
857,561 - Psest_0784 0.69 -1.3
857,561 - Psest_0784 0.69 +0.0
857,561 - Psest_0784 0.69 +0.8
857,564 - Psest_0784 0.69 -2.0
857,721 + Psest_0784 0.80 -1.0
857,721 + Psest_0784 0.80 -0.6
857,721 + Psest_0784 0.80 -0.3
857,842 + Psest_0784 0.89 -1.3
857,842 + Psest_0784 0.89 +0.5
858,020 - -0.5
858,020 - +1.1
858,020 - -0.3
858,020 - -0.1
858,021 + -0.9
858,021 + -1.0
858,021 + -0.3
858,021 + +0.1
858,021 + +1.0
858,022 - +0.1
858,022 - -1.1
858,022 - -0.3
858,022 - +0.4
858,022 - +0.4
858,022 - +0.1
858,027 + -0.2
858,027 + -0.8
858,104 - +0.4
858,104 - +2.1
858,152 + +0.1
858,353 - Psest_0785 0.26 -0.9
858,353 - Psest_0785 0.26 -0.8
858,457 + Psest_0785 0.37 -0.9
858,581 - Psest_0785 0.51 -0.5
858,581 - Psest_0785 0.51 -0.2
858,962 - -2.3
858,962 - +0.1
858,962 - +0.1
858,962 - -0.3
859,077 + -0.6
859,078 - -0.1
859,384 + +1.7
859,821 + Psest_0786 0.44 -0.3
859,821 + Psest_0786 0.44 -0.5
859,821 + Psest_0786 0.44 -0.6
859,821 + Psest_0786 0.44 -0.1
859,821 + Psest_0786 0.44 -0.6
859,822 - Psest_0786 0.44 -0.3
859,822 - Psest_0786 0.44 +1.1
859,822 - Psest_0786 0.44 -0.3

Or see this region's nucleotide sequence