Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0732

Experiment: Def Lomefloxacin 0.00004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0731 and Psest_0732 are separated by 154 nucleotidesPsest_0732 and Psest_0733 overlap by 4 nucleotides Psest_0731: Psest_0731 - Serine/threonine protein kinase involved in cell cycle control, at 800,735 to 801,625 _0731 Psest_0732: Psest_0732 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 801,780 to 803,252 _0732 Psest_0733: Psest_0733 - Cation/multidrug efflux pump, at 803,249 to 806,293 _0733 Position (kb) 801 802 803 804Strain fitness (log2 ratio) -1 0 1 2 3at 800.826 kb on + strand, within Psest_0731at 800.826 kb on + strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.870 kb on + strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.912 kb on + strand, within Psest_0731at 800.938 kb on + strand, within Psest_0731at 800.939 kb on - strand, within Psest_0731at 800.939 kb on - strand, within Psest_0731at 801.240 kb on + strand, within Psest_0731at 801.240 kb on + strand, within Psest_0731at 801.368 kb on + strand, within Psest_0731at 801.369 kb on - strand, within Psest_0731at 801.689 kb on + strandat 801.690 kb on - strandat 801.856 kb on + strandat 801.856 kb on + strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 802.120 kb on + strand, within Psest_0732at 802.121 kb on - strand, within Psest_0732at 802.121 kb on - strand, within Psest_0732at 802.121 kb on - strand, within Psest_0732at 803.031 kb on + strand, within Psest_0732at 803.031 kb on + strand, within Psest_0732at 803.032 kb on - strand, within Psest_0732at 803.032 kb on - strand, within Psest_0732at 803.402 kb on + strandat 803.478 kb on - strandat 803.478 kb on - strandat 803.784 kb on + strand, within Psest_0733at 803.784 kb on + strand, within Psest_0733at 803.785 kb on - strand, within Psest_0733at 803.785 kb on - strand, within Psest_0733at 803.785 kb on - strand, within Psest_0733at 803.785 kb on - strand, within Psest_0733at 803.964 kb on + strand, within Psest_0733at 803.965 kb on - strand, within Psest_0733at 804.221 kb on + strand, within Psest_0733at 804.221 kb on + strand, within Psest_0733

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Lomefloxacin 0.00004 mM
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800,826 + Psest_0731 0.10 -0.2
800,826 + Psest_0731 0.10 -0.1
800,827 - Psest_0731 0.10 +1.1
800,827 - Psest_0731 0.10 +0.7
800,827 - Psest_0731 0.10 -0.6
800,827 - Psest_0731 0.10 -0.4
800,827 - Psest_0731 0.10 +0.4
800,827 - Psest_0731 0.10 +0.6
800,827 - Psest_0731 0.10 +0.1
800,827 - Psest_0731 0.10 -0.5
800,827 - Psest_0731 0.10 -1.0
800,828 + Psest_0731 0.10 -0.9
800,828 + Psest_0731 0.10 -0.4
800,828 + Psest_0731 0.10 +1.7
800,828 + Psest_0731 0.10 -0.6
800,828 + Psest_0731 0.10 +0.1
800,828 + Psest_0731 0.10 +0.1
800,828 + Psest_0731 0.10 -0.1
800,828 + Psest_0731 0.10 -0.6
800,828 + Psest_0731 0.10 -1.1
800,828 + Psest_0731 0.10 +0.1
800,828 + Psest_0731 0.10 +0.4
800,828 + Psest_0731 0.10 +0.2
800,828 + Psest_0731 0.10 -0.3
800,828 + Psest_0731 0.10 -0.1
800,828 + Psest_0731 0.10 -1.0
800,828 + Psest_0731 0.10 -0.6
800,828 + Psest_0731 0.10 +1.7
800,828 + Psest_0731 0.10 -1.7
800,828 + Psest_0731 0.10 +0.7
800,828 + Psest_0731 0.10 +0.4
800,828 + Psest_0731 0.10 +0.7
800,829 - Psest_0731 0.11 -0.4
800,829 - Psest_0731 0.11 +1.7
800,829 - Psest_0731 0.11 -0.1
800,829 - Psest_0731 0.11 +0.5
800,829 - Psest_0731 0.11 +1.7
800,829 - Psest_0731 0.11 +1.1
800,829 - Psest_0731 0.11 -0.4
800,829 - Psest_0731 0.11 -0.9
800,829 - Psest_0731 0.11 +0.5
800,829 - Psest_0731 0.11 +1.1
800,829 - Psest_0731 0.11 -1.3
800,829 - Psest_0731 0.11 +1.7
800,829 - Psest_0731 0.11 -0.3
800,829 - Psest_0731 0.11 -0.7
800,829 - Psest_0731 0.11 +1.2
800,829 - Psest_0731 0.11 +0.5
800,829 - Psest_0731 0.11 +0.7
800,829 - Psest_0731 0.11 +0.0
800,829 - Psest_0731 0.11 +1.1
800,829 - Psest_0731 0.11 +1.1
800,829 - Psest_0731 0.11 +0.4
800,829 - Psest_0731 0.11 +0.4
800,870 + Psest_0731 0.15 +1.9
800,871 - Psest_0731 0.15 +0.5
800,871 - Psest_0731 0.15 +0.9
800,871 - Psest_0731 0.15 +0.8
800,871 - Psest_0731 0.15 +1.1
800,912 + Psest_0731 0.20 +1.3
800,938 + Psest_0731 0.23 -1.1
800,939 - Psest_0731 0.23 +0.1
800,939 - Psest_0731 0.23 +0.4
801,240 + Psest_0731 0.57 +3.7
801,240 + Psest_0731 0.57 +1.3
801,368 + Psest_0731 0.71 -1.3
801,369 - Psest_0731 0.71 +0.6
801,689 + +0.1
801,690 - -0.1
801,856 + -1.1
801,856 + -0.3
801,857 - -0.5
801,857 - +0.7
801,857 - +0.1
801,857 - +0.1
801,857 - +0.7
801,857 - -0.7
801,857 - -0.9
801,857 - -1.3
802,120 + Psest_0732 0.23 +0.7
802,121 - Psest_0732 0.23 -0.4
802,121 - Psest_0732 0.23 -0.3
802,121 - Psest_0732 0.23 -0.1
803,031 + Psest_0732 0.85 +1.7
803,031 + Psest_0732 0.85 -0.3
803,032 - Psest_0732 0.85 -0.9
803,032 - Psest_0732 0.85 -0.3
803,402 + +0.1
803,478 - +0.4
803,478 - +0.7
803,784 + Psest_0733 0.18 +0.3
803,784 + Psest_0733 0.18 +1.3
803,785 - Psest_0733 0.18 +0.6
803,785 - Psest_0733 0.18 +1.7
803,785 - Psest_0733 0.18 +0.7
803,785 - Psest_0733 0.18 +0.7
803,964 + Psest_0733 0.23 +1.3
803,965 - Psest_0733 0.24 +2.7
804,221 + Psest_0733 0.32 -0.3
804,221 + Psest_0733 0.32 -1.0

Or see this region's nucleotide sequence