Experiment: Def A22 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0660 and Psest_0661 are separated by 261 nucleotides Psest_0661 and Psest_0662 are separated by 16 nucleotides Psest_0662 and Psest_0663 are separated by 72 nucleotides
Psest_0660: Psest_0660 - Methyl-accepting chemotaxis protein, at 717,090 to 718,175
_0660
Psest_0661: Psest_0661 - PAS domain S-box, at 718,437 to 720,476
_0661
Psest_0662: Psest_0662 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 720,493 to 721,146
_0662
Psest_0663: Psest_0663 - PAS fold., at 721,219 to 723,018
_0663
Position (kb) 718
719
720
721 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 717.630 kb on - strand, within Psest_0660 at 717.630 kb on - strand, within Psest_0660 at 717.756 kb on - strand, within Psest_0660 at 718.250 kb on - strand at 718.359 kb on + strand at 718.359 kb on + strand at 718.359 kb on + strand at 718.360 kb on - strand at 718.360 kb on - strand at 718.474 kb on - strand at 718.525 kb on - strand at 718.599 kb on + strand at 718.599 kb on + strand at 718.599 kb on + strand at 718.599 kb on + strand at 718.600 kb on - strand at 718.600 kb on - strand at 718.600 kb on - strand at 718.600 kb on - strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.601 kb on + strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.602 kb on - strand at 718.863 kb on + strand, within Psest_0661 at 718.864 kb on - strand, within Psest_0661 at 719.108 kb on - strand, within Psest_0661 at 719.229 kb on + strand, within Psest_0661 at 719.292 kb on - strand, within Psest_0661 at 719.356 kb on + strand, within Psest_0661 at 719.356 kb on + strand, within Psest_0661 at 719.356 kb on + strand, within Psest_0661 at 719.356 kb on + strand, within Psest_0661 at 719.356 kb on + strand, within Psest_0661 at 719.357 kb on - strand, within Psest_0661 at 719.357 kb on - strand, within Psest_0661 at 719.357 kb on - strand, within Psest_0661 at 719.357 kb on - strand, within Psest_0661 at 719.357 kb on - strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.462 kb on + strand, within Psest_0661 at 719.463 kb on - strand, within Psest_0661 at 719.463 kb on - strand, within Psest_0661 at 719.463 kb on - strand, within Psest_0661 at 719.686 kb on + strand, within Psest_0661 at 719.686 kb on + strand, within Psest_0661 at 719.686 kb on + strand, within Psest_0661 at 719.687 kb on - strand, within Psest_0661 at 719.687 kb on - strand, within Psest_0661 at 719.687 kb on - strand, within Psest_0661 at 720.712 kb on + strand, within Psest_0662 at 720.760 kb on + strand, within Psest_0662 at 720.760 kb on + strand, within Psest_0662 at 720.761 kb on - strand, within Psest_0662 at 721.091 kb on + strand at 721.255 kb on + strand at 721.256 kb on - strand at 721.343 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def A22 0.015 mg/ml remove 717,630 - Psest_0660 0.50 +0.7 717,630 - Psest_0660 0.50 -0.3 717,756 - Psest_0660 0.61 +0.5 718,250 - +0.7 718,359 + -1.5 718,359 + -1.1 718,359 + +0.7 718,360 - -0.1 718,360 - -0.1 718,474 - -0.6 718,525 - +1.7 718,599 + +0.1 718,599 + +0.9 718,599 + +0.7 718,599 + -1.1 718,600 - -1.6 718,600 - -0.3 718,600 - -0.9 718,600 - +1.7 718,601 + -0.3 718,601 + +0.5 718,601 + -1.1 718,601 + +0.9 718,601 + -1.5 718,601 + +0.4 718,601 + -1.3 718,601 + +0.4 718,601 + -0.5 718,601 + -0.3 718,601 + -0.6 718,601 + +2.7 718,601 + +3.7 718,602 - +0.6 718,602 - -0.6 718,602 - +0.9 718,602 - +0.7 718,602 - +0.7 718,602 - +0.1 718,602 - +0.1 718,602 - -0.4 718,602 - +0.1 718,602 - +2.7 718,602 - -0.2 718,863 + Psest_0661 0.21 +0.7 718,864 - Psest_0661 0.21 +1.7 719,108 - Psest_0661 0.33 -1.6 719,229 + Psest_0661 0.39 -1.2 719,292 - Psest_0661 0.42 +0.9 719,356 + Psest_0661 0.45 +0.9 719,356 + Psest_0661 0.45 -0.9 719,356 + Psest_0661 0.45 -1.0 719,356 + Psest_0661 0.45 +0.7 719,356 + Psest_0661 0.45 +1.7 719,357 - Psest_0661 0.45 +0.1 719,357 - Psest_0661 0.45 +0.1 719,357 - Psest_0661 0.45 -0.5 719,357 - Psest_0661 0.45 -0.6 719,357 - Psest_0661 0.45 -0.9 719,462 + Psest_0661 0.50 -0.3 719,462 + Psest_0661 0.50 -0.5 719,462 + Psest_0661 0.50 -1.1 719,462 + Psest_0661 0.50 -0.9 719,462 + Psest_0661 0.50 +1.7 719,462 + Psest_0661 0.50 -0.4 719,462 + Psest_0661 0.50 +0.1 719,463 - Psest_0661 0.50 -1.8 719,463 - Psest_0661 0.50 +1.4 719,463 - Psest_0661 0.50 -0.9 719,686 + Psest_0661 0.61 +1.1 719,686 + Psest_0661 0.61 -0.7 719,686 + Psest_0661 0.61 +1.1 719,687 - Psest_0661 0.61 -0.6 719,687 - Psest_0661 0.61 -0.3 719,687 - Psest_0661 0.61 -2.5 720,712 + Psest_0662 0.33 +0.1 720,760 + Psest_0662 0.41 +1.7 720,760 + Psest_0662 0.41 +0.4 720,761 - Psest_0662 0.41 +1.4 721,091 + +0.3 721,255 + +2.3 721,256 - -0.2 721,343 + -0.9
Or see this region's nucleotide sequence