Experiment: Def A22 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0571 and Psest_0573 are separated by 544 nucleotides Psest_0573 and Psest_0574 are separated by 25 nucleotides Psest_0574 and Psest_0575 are separated by 156 nucleotides
Psest_0571: Psest_0571 - Transcriptional regulators, at 626,607 to 627,086
_0571
Psest_0573: Psest_0573 - cation diffusion facilitator family transporter, at 627,631 to 628,521
_0573
Psest_0574: Psest_0574 - hypothetical protein, at 628,547 to 628,963
_0574
Psest_0575: Psest_0575 - HrpA-like helicases, at 629,120 to 629,584
_0575
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 626.764 kb on + strand, within Psest_0571 at 626.765 kb on - strand, within Psest_0571 at 626.881 kb on + strand, within Psest_0571 at 626.939 kb on + strand, within Psest_0571 at 626.940 kb on - strand, within Psest_0571 at 626.940 kb on - strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 627.129 kb on - strand at 627.131 kb on + strand at 627.157 kb on + strand at 627.157 kb on + strand at 627.206 kb on + strand at 627.207 kb on - strand at 627.207 kb on - strand at 627.274 kb on + strand at 627.360 kb on + strand at 627.360 kb on + strand at 627.361 kb on - strand at 627.528 kb on + strand at 627.529 kb on - strand at 627.529 kb on - strand at 627.804 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 628.055 kb on + strand, within Psest_0573 at 628.115 kb on + strand, within Psest_0573 at 628.116 kb on - strand, within Psest_0573 at 628.492 kb on - strand at 628.533 kb on - strand at 628.731 kb on + strand, within Psest_0574 at 628.732 kb on - strand, within Psest_0574 at 628.732 kb on - strand, within Psest_0574 at 628.749 kb on + strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.836 kb on - strand, within Psest_0574 at 628.836 kb on - strand, within Psest_0574 at 628.957 kb on + strand at 628.957 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 629.092 kb on - strand at 629.092 kb on - strand at 629.092 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.130 kb on + strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.135 kb on - strand at 629.135 kb on - strand at 629.508 kb on + strand, within Psest_0575
Per-strain Table
Position Strand Gene LocusTag Fraction Def A22 0.015 mg/ml remove 626,764 + Psest_0571 0.33 +0.7 626,765 - Psest_0571 0.33 -0.1 626,881 + Psest_0571 0.57 +0.1 626,939 + Psest_0571 0.69 +0.1 626,940 - Psest_0571 0.69 -0.1 626,940 - Psest_0571 0.69 +1.2 626,941 + Psest_0571 0.70 -0.0 626,941 + Psest_0571 0.70 -0.9 626,941 + +2.7 626,941 + Psest_0571 0.70 -0.3 626,941 + Psest_0571 0.70 -0.7 626,941 + Psest_0571 0.70 -0.0 626,941 + Psest_0571 0.70 -0.0 626,941 + Psest_0571 0.70 -1.0 626,942 - Psest_0571 0.70 -1.2 626,942 - Psest_0571 0.70 -1.3 626,942 - Psest_0571 0.70 -0.1 626,942 - Psest_0571 0.70 +0.1 626,942 - Psest_0571 0.70 -1.6 627,129 - +1.2 627,131 + -0.5 627,157 + +0.3 627,157 + -1.0 627,206 + -1.1 627,207 - -1.9 627,207 - -0.0 627,274 + +1.7 627,360 + -0.6 627,360 + -2.2 627,361 - -1.8 627,528 + -1.6 627,529 - +0.7 627,529 - -1.1 627,804 + Psest_0573 0.19 -1.1 627,950 + Psest_0573 0.36 -1.3 627,950 + Psest_0573 0.36 +1.7 627,950 + Psest_0573 0.36 +0.1 627,950 + Psest_0573 0.36 +0.7 627,950 + Psest_0573 0.36 -0.7 627,950 + Psest_0573 0.36 -0.3 627,951 - Psest_0573 0.36 -1.0 627,951 - Psest_0573 0.36 +0.7 627,951 - Psest_0573 0.36 -0.6 627,951 - Psest_0573 0.36 +1.4 627,951 - Psest_0573 0.36 +0.7 627,951 - Psest_0573 0.36 -1.0 627,951 - Psest_0573 0.36 -1.9 628,055 + Psest_0573 0.48 -0.3 628,115 + Psest_0573 0.54 -2.4 628,116 - Psest_0573 0.54 -1.8 628,492 - +0.2 628,533 - -0.9 628,731 + Psest_0574 0.44 +0.7 628,732 - Psest_0574 0.44 +0.3 628,732 - Psest_0574 0.44 +0.7 628,749 + Psest_0574 0.48 +2.3 628,750 - Psest_0574 0.49 +1.1 628,750 - Psest_0574 0.49 -0.2 628,750 - Psest_0574 0.49 -1.5 628,750 - Psest_0574 0.49 -1.1 628,750 - Psest_0574 0.49 -0.3 628,803 + Psest_0574 0.61 -0.1 628,803 + Psest_0574 0.61 -2.0 628,803 + Psest_0574 0.61 +0.7 628,803 + Psest_0574 0.61 +0.7 628,803 + Psest_0574 0.61 -0.3 628,804 - Psest_0574 0.62 -0.6 628,804 - Psest_0574 0.62 -0.9 628,804 - Psest_0574 0.62 -0.3 628,804 - Psest_0574 0.62 -0.5 628,804 - Psest_0574 0.62 -1.9 628,804 - Psest_0574 0.62 +0.6 628,804 - Psest_0574 0.62 +1.3 628,804 - Psest_0574 0.62 -1.3 628,804 - Psest_0574 0.62 -0.6 628,804 - Psest_0574 0.62 -0.4 628,804 - Psest_0574 0.62 +1.1 628,804 - Psest_0574 0.62 +0.2 628,836 - Psest_0574 0.69 +0.5 628,836 - Psest_0574 0.69 -1.0 628,957 + +0.7 628,957 + +1.7 628,992 + +1.7 628,992 + +0.7 628,992 + +2.3 628,992 + +0.4 628,992 + -0.2 628,992 + +1.7 628,992 + +0.4 628,992 + -1.5 628,992 + +0.8 628,992 + +0.7 628,992 + +0.1 628,992 + -0.3 628,992 + +1.7 628,992 + +0.7 628,992 + +0.4 628,992 + +1.7 628,992 + +0.1 628,992 + +0.8 628,993 - -1.1 628,993 - -0.1 628,993 - -0.1 628,993 - +1.7 628,993 - +0.4 628,993 - -0.6 628,993 - -0.8 628,993 - -0.6 628,993 - +0.3 628,994 + +0.1 628,994 + +1.7 628,994 + -0.3 628,994 + +0.7 628,994 + -0.6 628,994 + +0.4 628,994 + +1.7 628,994 + +0.7 628,994 + +1.4 628,994 + +1.7 628,994 + +1.7 628,994 + +3.3 628,994 + +1.3 628,994 + -1.1 628,994 + -0.5 628,994 + -1.1 628,994 + +0.7 628,994 + -0.6 628,994 + +1.7 628,994 + -0.3 628,994 + +0.7 628,995 - +0.1 628,995 - -0.2 628,995 - +0.1 628,995 - +0.7 628,995 - -1.3 628,995 - -0.9 628,995 - +0.3 628,995 - -0.4 628,995 - +0.4 628,995 - +0.2 628,995 - -1.1 628,995 - -0.3 628,995 - -0.3 628,995 - +0.1 628,995 - +0.5 628,995 - -0.3 628,995 - -0.6 628,995 - -0.2 628,995 - -2.4 628,995 - +1.7 628,995 - +1.7 628,995 - -1.5 628,995 - -0.5 628,995 - +0.2 628,995 - +0.7 628,995 - +0.7 628,995 - +0.7 628,995 - -0.6 628,995 - -1.1 628,995 - +0.7 628,995 - -1.4 628,995 - +1.2 628,995 - +1.7 629,092 - +0.8 629,092 - +0.1 629,092 - -1.1 629,094 - -1.5 629,094 - +1.3 629,094 - -0.2 629,094 - -0.3 629,094 - +0.5 629,130 + +2.3 629,131 - -1.5 629,131 - -0.3 629,131 - +0.3 629,131 - +0.1 629,135 - +0.5 629,135 - -0.9 629,508 + Psest_0575 0.83 +0.4
Or see this region's nucleotide sequence