Experiment: Def A22 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0361 and Psest_0362 overlap by 1 nucleotides Psest_0362 and Psest_0363 are separated by 58 nucleotides Psest_0363 and Psest_0364 are separated by 78 nucleotides
Psest_0361: Psest_0361 - TRAP transporter, DctM subunit, at 387,496 to 388,776
_0361
Psest_0362: Psest_0362 - TRAP-type C4-dicarboxylate transport system, small permease component, at 388,776 to 389,303
_0362
Psest_0363: Psest_0363 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 389,362 to 390,333
_0363
Psest_0364: Psest_0364 - Gluconolactonase, at 390,412 to 391,302
_0364
Position (kb) 389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 388.729 kb on + strand at 388.810 kb on + strand at 388.843 kb on + strand, within Psest_0362 at 388.843 kb on + strand, within Psest_0362 at 388.843 kb on + strand, within Psest_0362 at 388.903 kb on + strand, within Psest_0362 at 388.903 kb on + strand, within Psest_0362 at 388.904 kb on - strand, within Psest_0362 at 388.942 kb on + strand, within Psest_0362 at 388.943 kb on - strand, within Psest_0362 at 388.943 kb on - strand, within Psest_0362 at 388.972 kb on + strand, within Psest_0362 at 389.266 kb on + strand at 389.267 kb on - strand at 389.286 kb on + strand at 389.287 kb on - strand at 389.411 kb on + strand at 389.412 kb on - strand at 389.412 kb on - strand at 389.412 kb on - strand at 389.441 kb on + strand at 389.657 kb on + strand, within Psest_0363 at 389.657 kb on + strand, within Psest_0363 at 389.657 kb on + strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.879 kb on + strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 389.880 kb on - strand, within Psest_0363 at 390.755 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.803 kb on + strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 390.804 kb on - strand, within Psest_0364 at 391.217 kb on + strand at 391.323 kb on + strand at 391.324 kb on - strand at 391.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def A22 0.015 mg/ml remove 388,729 + -0.7 388,810 + +0.8 388,843 + Psest_0362 0.13 +0.4 388,843 + Psest_0362 0.13 +0.8 388,843 + Psest_0362 0.13 -1.9 388,903 + Psest_0362 0.24 -0.5 388,903 + Psest_0362 0.24 -2.5 388,904 - Psest_0362 0.24 -2.8 388,942 + Psest_0362 0.31 -0.4 388,943 - Psest_0362 0.32 -0.4 388,943 - Psest_0362 0.32 -0.5 388,972 + Psest_0362 0.37 -1.0 389,266 + -1.4 389,267 - +0.2 389,286 + +1.5 389,287 - -0.9 389,411 + -0.0 389,412 - +0.8 389,412 - +0.6 389,412 - -1.1 389,441 + -1.2 389,657 + Psest_0363 0.30 -0.2 389,657 + Psest_0363 0.30 +0.2 389,657 + Psest_0363 0.30 +1.4 389,658 - Psest_0363 0.30 -1.5 389,658 - Psest_0363 0.30 -1.0 389,658 - Psest_0363 0.30 +0.1 389,658 - Psest_0363 0.30 +1.8 389,879 + Psest_0363 0.53 -1.2 389,880 - Psest_0363 0.53 +0.2 389,880 - Psest_0363 0.53 -0.3 389,880 - Psest_0363 0.53 -0.4 389,880 - Psest_0363 0.53 -0.4 389,880 - Psest_0363 0.53 -1.0 389,880 - Psest_0363 0.53 -1.3 390,755 + Psest_0364 0.38 +0.8 390,803 + Psest_0364 0.44 +0.8 390,803 + Psest_0364 0.44 +0.7 390,803 + Psest_0364 0.44 -0.5 390,803 + Psest_0364 0.44 -0.7 390,803 + Psest_0364 0.44 -0.7 390,803 + Psest_0364 0.44 -0.3 390,804 - Psest_0364 0.44 -2.5 390,804 - Psest_0364 0.44 -0.3 390,804 - Psest_0364 0.44 +0.8 390,804 - Psest_0364 0.44 -0.5 390,804 - Psest_0364 0.44 +1.4 390,804 - Psest_0364 0.44 -0.8 390,804 - Psest_0364 0.44 +1.2 390,804 - Psest_0364 0.44 -0.7 390,804 - Psest_0364 0.44 -0.5 390,804 - Psest_0364 0.44 -0.8 391,217 + -1.2 391,323 + +1.1 391,324 - -0.9 391,324 - +0.2
Or see this region's nucleotide sequence