Experiment: Def A22 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0360 and Psest_0361 are separated by 223 nucleotides Psest_0361 and Psest_0362 overlap by 1 nucleotides Psest_0362 and Psest_0363 are separated by 58 nucleotides
Psest_0360: Psest_0360 - Predicted permease, DMT superfamily, at 386,370 to 387,272
_0360
Psest_0361: Psest_0361 - TRAP transporter, DctM subunit, at 387,496 to 388,776
_0361
Psest_0362: Psest_0362 - TRAP-type C4-dicarboxylate transport system, small permease component, at 388,776 to 389,303
_0362
Psest_0363: Psest_0363 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 389,362 to 390,333
_0363
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.566 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.284 kb on - strand at 387.333 kb on - strand at 387.383 kb on + strand at 387.383 kb on + strand at 387.392 kb on - strand at 387.392 kb on - strand at 387.392 kb on - strand at 387.424 kb on - strand at 387.432 kb on - strand at 387.432 kb on - strand at 387.505 kb on + strand at 387.505 kb on + strand at 387.538 kb on - strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.575 kb on + strand at 387.575 kb on + strand at 387.596 kb on - strand at 387.596 kb on - strand at 387.664 kb on - strand, within Psest_0361 at 387.836 kb on + strand, within Psest_0361 at 387.905 kb on + strand, within Psest_0361 at 387.906 kb on - strand, within Psest_0361 at 387.998 kb on + strand, within Psest_0361 at 387.998 kb on + strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 388.007 kb on + strand, within Psest_0361 at 388.007 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.181 kb on + strand, within Psest_0361 at 388.182 kb on - strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.304 kb on + strand, within Psest_0361 at 388.305 kb on - strand, within Psest_0361 at 388.305 kb on - strand, within Psest_0361 at 388.346 kb on - strand, within Psest_0361 at 388.729 kb on + strand at 388.810 kb on + strand at 388.843 kb on + strand, within Psest_0362 at 388.843 kb on + strand, within Psest_0362 at 388.843 kb on + strand, within Psest_0362 at 388.903 kb on + strand, within Psest_0362 at 388.903 kb on + strand, within Psest_0362 at 388.904 kb on - strand, within Psest_0362 at 388.942 kb on + strand, within Psest_0362 at 388.943 kb on - strand, within Psest_0362 at 388.943 kb on - strand, within Psest_0362 at 388.972 kb on + strand, within Psest_0362 at 389.266 kb on + strand at 389.267 kb on - strand at 389.286 kb on + strand at 389.287 kb on - strand at 389.411 kb on + strand at 389.412 kb on - strand at 389.412 kb on - strand at 389.412 kb on - strand at 389.441 kb on + strand at 389.657 kb on + strand, within Psest_0363 at 389.657 kb on + strand, within Psest_0363 at 389.657 kb on + strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363 at 389.658 kb on - strand, within Psest_0363
Per-strain Table
Position Strand Gene LocusTag Fraction Def A22 0.015 mg/ml remove 386,566 + Psest_0360 0.22 -0.2 386,676 + Psest_0360 0.34 -0.4 386,676 + Psest_0360 0.34 -1.9 386,676 + Psest_0360 0.34 -0.6 386,676 + Psest_0360 0.34 +2.4 386,677 - Psest_0360 0.34 +0.8 386,677 - Psest_0360 0.34 +0.8 386,677 - Psest_0360 0.34 +0.2 386,677 - Psest_0360 0.34 +0.1 386,677 - Psest_0360 0.34 -1.2 386,677 - Psest_0360 0.34 +0.8 387,005 - Psest_0360 0.70 -0.5 387,005 - Psest_0360 0.70 +1.8 387,005 - Psest_0360 0.70 -0.8 387,005 - Psest_0360 0.70 -1.9 387,005 - Psest_0360 0.70 +2.8 387,005 - Psest_0360 0.70 -0.5 387,005 - Psest_0360 0.70 -1.0 387,154 - Psest_0360 0.87 -1.5 387,154 - Psest_0360 0.87 +0.5 387,154 - Psest_0360 0.87 -0.5 387,284 - -0.7 387,333 - +0.2 387,383 + -0.5 387,383 + +1.8 387,392 - -1.0 387,392 - +0.5 387,392 - -0.2 387,424 - +0.2 387,432 - -0.4 387,432 - +1.1 387,505 + -0.3 387,505 + -1.4 387,538 - +0.3 387,539 + -0.0 387,539 + +0.2 387,539 + +0.2 387,539 + +1.2 387,539 + -1.1 387,539 + -0.4 387,539 + -0.4 387,539 + -0.0 387,539 + -0.0 387,539 + -0.6 387,539 + -0.5 387,539 + -2.6 387,539 + -0.0 387,539 + -0.5 387,539 + -0.5 387,539 + -2.4 387,540 - -0.5 387,540 - -0.5 387,540 - -1.7 387,540 - +0.2 387,540 - -1.0 387,540 - -0.1 387,540 - -0.7 387,540 - +0.2 387,540 - +1.8 387,540 - +0.2 387,540 - +0.3 387,540 - -0.3 387,540 - -1.8 387,540 - +1.4 387,540 - +1.6 387,575 + +0.1 387,575 + +0.8 387,596 - -1.0 387,596 - -0.4 387,664 - Psest_0361 0.13 -0.2 387,836 + Psest_0361 0.27 -0.6 387,905 + Psest_0361 0.32 +1.8 387,906 - Psest_0361 0.32 -0.8 387,998 + Psest_0361 0.39 -1.3 387,998 + Psest_0361 0.39 +1.0 387,999 - Psest_0361 0.39 +1.8 387,999 - Psest_0361 0.39 -0.5 387,999 - Psest_0361 0.39 +0.2 387,999 - Psest_0361 0.39 -1.3 388,007 + Psest_0361 0.40 +0.2 388,007 + Psest_0361 0.40 +0.6 388,165 + Psest_0361 0.52 -1.0 388,165 + Psest_0361 0.52 +1.5 388,165 + Psest_0361 0.52 -0.0 388,165 + Psest_0361 0.52 -2.0 388,165 + Psest_0361 0.52 -0.8 388,165 + Psest_0361 0.52 -0.8 388,166 - Psest_0361 0.52 +0.2 388,166 - Psest_0361 0.52 +0.2 388,166 - Psest_0361 0.52 -0.2 388,166 - Psest_0361 0.52 -0.2 388,166 - Psest_0361 0.52 -1.1 388,166 - Psest_0361 0.52 -1.2 388,166 - Psest_0361 0.52 +0.5 388,181 + Psest_0361 0.53 -0.3 388,182 - Psest_0361 0.54 -1.7 388,304 + Psest_0361 0.63 -0.1 388,304 + Psest_0361 0.63 -0.1 388,304 + Psest_0361 0.63 +0.1 388,304 + Psest_0361 0.63 -1.0 388,304 + Psest_0361 0.63 +0.2 388,304 + Psest_0361 0.63 +0.8 388,304 + Psest_0361 0.63 -0.4 388,304 + Psest_0361 0.63 -1.0 388,305 - Psest_0361 0.63 -1.9 388,305 - Psest_0361 0.63 -0.3 388,346 - Psest_0361 0.66 -1.0 388,729 + -0.7 388,810 + +0.8 388,843 + Psest_0362 0.13 +0.4 388,843 + Psest_0362 0.13 +0.8 388,843 + Psest_0362 0.13 -1.9 388,903 + Psest_0362 0.24 -0.5 388,903 + Psest_0362 0.24 -2.5 388,904 - Psest_0362 0.24 -2.8 388,942 + Psest_0362 0.31 -0.4 388,943 - Psest_0362 0.32 -0.4 388,943 - Psest_0362 0.32 -0.5 388,972 + Psest_0362 0.37 -1.0 389,266 + -1.4 389,267 - +0.2 389,286 + +1.5 389,287 - -0.9 389,411 + -0.0 389,412 - +0.8 389,412 - +0.6 389,412 - -1.1 389,441 + -1.2 389,657 + Psest_0363 0.30 -0.2 389,657 + Psest_0363 0.30 +0.2 389,657 + Psest_0363 0.30 +1.4 389,658 - Psest_0363 0.30 -1.5 389,658 - Psest_0363 0.30 -1.0 389,658 - Psest_0363 0.30 +0.1 389,658 - Psest_0363 0.30 +1.8
Or see this region's nucleotide sequence