Experiment: Def A22 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3552 and Psest_3553 overlap by 4 nucleotides Psest_3553 and Psest_3554 are separated by 112 nucleotides Psest_3554 and Psest_3555 overlap by 4 nucleotides Psest_3555 and Psest_3556 are separated by 16 nucleotides
Psest_3552: Psest_3552 - riboflavin biosynthesis protein RibD, at 3,730,904 to 3,732,004
_3552
Psest_3553: Psest_3553 - transcriptional regulator NrdR, at 3,732,001 to 3,732,468
_3553
Psest_3554: Psest_3554 - Uncharacterized protein conserved in bacteria, at 3,732,581 to 3,733,006
_3554
Psest_3555: Psest_3555 - Predicted methyltransferase, at 3,733,003 to 3,733,656
_3555
Psest_3556: Psest_3556 - 2'-5' RNA ligase, at 3,733,673 to 3,734,194
_3556
Position (kb)
3732
3733
3734 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3732.546 kb on + strand at 3732.546 kb on + strand at 3732.546 kb on + strand at 3732.546 kb on + strand at 3732.546 kb on + strand at 3732.546 kb on + strand at 3732.547 kb on - strand at 3732.547 kb on - strand at 3732.547 kb on - strand at 3732.547 kb on - strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.548 kb on + strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.549 kb on - strand at 3732.603 kb on + strand at 3732.603 kb on + strand at 3732.603 kb on + strand at 3732.604 kb on - strand at 3732.604 kb on - strand at 3732.949 kb on + strand, within Psest_3554 at 3732.949 kb on + strand, within Psest_3554 at 3732.949 kb on + strand, within Psest_3554 at 3732.950 kb on - strand, within Psest_3554 at 3732.950 kb on - strand, within Psest_3554 at 3732.950 kb on - strand, within Psest_3554 at 3733.067 kb on + strand at 3733.068 kb on - strand at 3733.119 kb on + strand, within Psest_3555 at 3733.394 kb on + strand, within Psest_3555 at 3733.394 kb on + strand, within Psest_3555 at 3733.395 kb on - strand, within Psest_3555 at 3733.395 kb on - strand, within Psest_3555 at 3733.433 kb on - strand, within Psest_3555 at 3733.462 kb on + strand, within Psest_3555 at 3733.463 kb on - strand, within Psest_3555 at 3733.561 kb on + strand, within Psest_3555 at 3733.654 kb on + strand at 3733.655 kb on - strand at 3733.948 kb on + strand, within Psest_3556 at 3733.948 kb on + strand, within Psest_3556 at 3733.948 kb on + strand, within Psest_3556 at 3733.948 kb on + strand, within Psest_3556 at 3733.948 kb on + strand, within Psest_3556 at 3733.949 kb on - strand, within Psest_3556 at 3733.949 kb on - strand, within Psest_3556 at 3733.962 kb on + strand, within Psest_3556 at 3733.962 kb on + strand, within Psest_3556 at 3733.963 kb on - strand, within Psest_3556
Per-strain Table
Position Strand Gene LocusTag Fraction Def A22 0.015 mg/ml remove 3,732,546 + -1.2 3,732,546 + -0.9 3,732,546 + -0.8 3,732,546 + -1.0 3,732,546 + -1.7 3,732,546 + +1.7 3,732,547 - +1.7 3,732,547 - +0.2 3,732,547 - -0.3 3,732,547 - +1.2 3,732,548 + -0.3 3,732,548 + +1.7 3,732,548 + +0.7 3,732,548 + +0.1 3,732,548 + +0.5 3,732,548 + -0.7 3,732,548 + +0.7 3,732,548 + -0.7 3,732,548 + +1.2 3,732,548 + -0.5 3,732,548 + +1.7 3,732,548 + -0.2 3,732,548 + +0.3 3,732,548 + +0.3 3,732,549 - +0.1 3,732,549 - -0.7 3,732,549 - -0.7 3,732,549 - -1.5 3,732,549 - +0.1 3,732,549 - -0.1 3,732,549 - +2.7 3,732,549 - +0.4 3,732,549 - -1.7 3,732,549 - +0.8 3,732,549 - -1.5 3,732,549 - +1.1 3,732,549 - +0.7 3,732,549 - -0.2 3,732,549 - +1.7 3,732,549 - -0.8 3,732,603 + -0.7 3,732,603 + +1.7 3,732,603 + -0.2 3,732,604 - +0.2 3,732,604 - -2.3 3,732,949 + Psest_3554 0.86 +1.7 3,732,949 + Psest_3554 0.86 -0.9 3,732,949 + Psest_3554 0.86 +0.2 3,732,950 - Psest_3554 0.87 +0.1 3,732,950 - Psest_3554 0.87 -1.4 3,732,950 - Psest_3554 0.87 -0.3 3,733,067 + +1.7 3,733,068 - +1.7 3,733,119 + Psest_3555 0.18 +0.1 3,733,394 + Psest_3555 0.60 -0.2 3,733,394 + Psest_3555 0.60 -0.8 3,733,395 - Psest_3555 0.60 -1.1 3,733,395 - Psest_3555 0.60 +0.1 3,733,433 - Psest_3555 0.66 +0.4 3,733,462 + Psest_3555 0.70 +0.7 3,733,463 - Psest_3555 0.70 -0.7 3,733,561 + Psest_3555 0.85 -1.5 3,733,654 + +0.9 3,733,655 - +0.7 3,733,948 + Psest_3556 0.53 -0.2 3,733,948 + Psest_3556 0.53 -0.4 3,733,948 + Psest_3556 0.53 +1.4 3,733,948 + Psest_3556 0.53 +1.1 3,733,948 + Psest_3556 0.53 -0.4 3,733,949 - Psest_3556 0.53 +1.3 3,733,949 - Psest_3556 0.53 +0.4 3,733,962 + Psest_3556 0.55 -0.5 3,733,962 + Psest_3556 0.55 -1.5 3,733,963 - Psest_3556 0.56 +0.7
Or see this region's nucleotide sequence