Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0262

Experiment: Def A22 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0261 and Psest_0262 are separated by 83 nucleotidesPsest_0262 and Psest_0263 are separated by 185 nucleotides Psest_0261: Psest_0261 - alternative sigma factor RpoH, at 275,656 to 276,510 _0261 Psest_0262: Psest_0262 - PAS domain S-box, at 276,594 to 279,164 _0262 Psest_0263: Psest_0263 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 279,350 to 281,278 _0263 Position (kb) 276 277 278 279 280Strain fitness (log2 ratio) -2 -1 0 1 2 3at 275.622 kb on + strandat 275.622 kb on + strandat 275.622 kb on + strandat 276.524 kb on - strandat 276.642 kb on + strandat 276.747 kb on - strandat 276.841 kb on + strandat 276.923 kb on + strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 277.176 kb on + strand, within Psest_0262at 277.234 kb on - strand, within Psest_0262at 277.386 kb on + strand, within Psest_0262at 277.386 kb on + strand, within Psest_0262at 277.386 kb on + strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.768 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 278.024 kb on + strand, within Psest_0262at 278.024 kb on + strand, within Psest_0262at 278.025 kb on - strand, within Psest_0262at 278.299 kb on + strand, within Psest_0262at 278.300 kb on - strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.450 kb on - strand, within Psest_0262at 278.450 kb on - strand, within Psest_0262at 278.450 kb on - strand, within Psest_0262at 278.512 kb on + strand, within Psest_0262at 278.520 kb on + strand, within Psest_0262at 278.521 kb on - strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.567 kb on + strand, within Psest_0262at 278.568 kb on - strand, within Psest_0262at 278.647 kb on + strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.711 kb on + strand, within Psest_0262at 278.711 kb on + strand, within Psest_0262at 278.711 kb on + strand, within Psest_0262at 278.712 kb on - strand, within Psest_0262at 278.713 kb on + strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 279.075 kb on + strandat 279.248 kb on + strandat 279.249 kb on - strandat 279.249 kb on - strandat 279.314 kb on + strandat 279.314 kb on + strandat 279.315 kb on - strandat 279.315 kb on - strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.516 kb on - strandat 279.516 kb on - strandat 279.516 kb on - strandat 279.622 kb on + strand, within Psest_0263at 279.622 kb on + strand, within Psest_0263at 279.622 kb on + strand, within Psest_0263at 279.623 kb on - strand, within Psest_0263at 279.812 kb on - strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 280.074 kb on + strand, within Psest_0263at 280.075 kb on - strand, within Psest_0263at 280.075 kb on - strand, within Psest_0263at 280.075 kb on - strand, within Psest_0263at 280.086 kb on + strand, within Psest_0263

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Per-strain Table

Position Strand Gene LocusTag Fraction Def A22 0.015 mg/ml
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275,622 + -0.8
275,622 + +0.2
275,622 + -0.8
276,524 - +0.6
276,642 + +0.3
276,747 - +0.3
276,841 + +1.3
276,923 + Psest_0262 0.13 +0.3
276,924 - Psest_0262 0.13 -0.3
276,924 - Psest_0262 0.13 +0.5
276,924 - Psest_0262 0.13 +0.4
276,924 - Psest_0262 0.13 -1.3
276,924 - Psest_0262 0.13 +0.4
276,924 - Psest_0262 0.13 +0.3
277,176 + Psest_0262 0.23 -0.0
277,234 - Psest_0262 0.25 +0.6
277,386 + Psest_0262 0.31 -0.1
277,386 + Psest_0262 0.31 -0.3
277,386 + Psest_0262 0.31 +0.0
277,387 - Psest_0262 0.31 -0.7
277,387 - Psest_0262 0.31 -0.1
277,387 - Psest_0262 0.31 -0.4
277,387 - Psest_0262 0.31 +0.1
277,387 - Psest_0262 0.31 +1.3
277,387 - Psest_0262 0.31 -0.5
277,387 - Psest_0262 0.31 +1.1
277,768 + Psest_0262 0.46 +0.7
277,981 + Psest_0262 0.54 +0.2
277,981 + Psest_0262 0.54 +0.7
277,981 + Psest_0262 0.54 +0.7
277,981 + Psest_0262 0.54 +0.1
277,981 + Psest_0262 0.54 +0.4
277,981 + Psest_0262 0.54 +0.4
277,981 + Psest_0262 0.54 +1.5
277,981 + Psest_0262 0.54 +0.0
277,981 + Psest_0262 0.54 -0.6
277,981 + Psest_0262 0.54 -0.7
277,981 + Psest_0262 0.54 -0.1
277,981 + Psest_0262 0.54 +0.5
277,981 + Psest_0262 0.54 -1.0
277,981 + Psest_0262 0.54 +0.3
277,981 + Psest_0262 0.54 +0.0
277,981 + Psest_0262 0.54 +0.5
277,981 + Psest_0262 0.54 -0.4
277,981 + Psest_0262 0.54 -0.1
277,981 + Psest_0262 0.54 -0.7
277,981 + Psest_0262 0.54 +1.9
277,982 - Psest_0262 0.54 -0.2
277,982 - Psest_0262 0.54 +0.1
277,982 - Psest_0262 0.54 -0.2
277,982 - Psest_0262 0.54 +1.1
277,982 - Psest_0262 0.54 +0.1
277,982 - Psest_0262 0.54 +1.1
277,982 - Psest_0262 0.54 +3.5
277,982 - Psest_0262 0.54 +1.2
277,982 - Psest_0262 0.54 +0.5
278,024 + Psest_0262 0.56 +0.6
278,024 + Psest_0262 0.56 +0.1
278,025 - Psest_0262 0.56 +0.3
278,299 + Psest_0262 0.66 +0.3
278,300 - Psest_0262 0.66 -1.6
278,338 + Psest_0262 0.68 +0.8
278,338 + Psest_0262 0.68 +0.4
278,338 + Psest_0262 0.68 +0.3
278,338 + Psest_0262 0.68 +0.6
278,338 + Psest_0262 0.68 +0.7
278,338 + Psest_0262 0.68 -1.0
278,338 + Psest_0262 0.68 -0.3
278,338 + Psest_0262 0.68 +0.1
278,338 + Psest_0262 0.68 -0.1
278,338 + Psest_0262 0.68 +0.2
278,338 + Psest_0262 0.68 +1.4
278,338 + Psest_0262 0.68 +0.5
278,338 + Psest_0262 0.68 +0.6
278,338 + Psest_0262 0.68 -0.1
278,338 + Psest_0262 0.68 +0.6
278,338 + Psest_0262 0.68 +0.1
278,338 + Psest_0262 0.68 -2.0
278,338 + Psest_0262 0.68 +1.6
278,338 + Psest_0262 0.68 +0.5
278,338 + Psest_0262 0.68 -0.3
278,338 + Psest_0262 0.68 -0.3
278,338 + Psest_0262 0.68 -0.1
278,339 - Psest_0262 0.68 +0.1
278,339 - Psest_0262 0.68 +0.3
278,339 - Psest_0262 0.68 -0.1
278,339 - Psest_0262 0.68 -1.0
278,339 - Psest_0262 0.68 +0.2
278,339 - Psest_0262 0.68 +0.0
278,339 - Psest_0262 0.68 -0.0
278,339 - Psest_0262 0.68 +1.1
278,339 - Psest_0262 0.68 +0.2
278,339 - Psest_0262 0.68 +1.1
278,339 - Psest_0262 0.68 -0.3
278,339 - Psest_0262 0.68 -0.6
278,339 - Psest_0262 0.68 +0.2
278,339 - Psest_0262 0.68 +0.9
278,339 - Psest_0262 0.68 +0.3
278,339 - Psest_0262 0.68 +1.3
278,339 - Psest_0262 0.68 -1.8
278,339 - Psest_0262 0.68 -0.4
278,339 - Psest_0262 0.68 -0.4
278,339 - Psest_0262 0.68 +0.8
278,339 - Psest_0262 0.68 +0.1
278,339 - Psest_0262 0.68 +0.4
278,339 - Psest_0262 0.68 -0.3
278,374 + Psest_0262 0.69 +1.3
278,374 + Psest_0262 0.69 +0.7
278,374 + Psest_0262 0.69 +1.3
278,374 + Psest_0262 0.69 +0.8
278,374 + Psest_0262 0.69 +0.9
278,374 + Psest_0262 0.69 +1.1
278,374 + Psest_0262 0.69 -0.0
278,374 + Psest_0262 0.69 +0.9
278,374 + Psest_0262 0.69 +0.5
278,375 - Psest_0262 0.69 +1.3
278,375 - Psest_0262 0.69 +0.2
278,375 - Psest_0262 0.69 -0.4
278,375 - Psest_0262 0.69 +0.5
278,375 - Psest_0262 0.69 +0.6
278,375 - Psest_0262 0.69 +0.9
278,375 - Psest_0262 0.69 +0.2
278,375 - Psest_0262 0.69 -0.1
278,375 - Psest_0262 0.69 +2.1
278,375 - Psest_0262 0.69 -0.1
278,375 - Psest_0262 0.69 +0.5
278,375 - Psest_0262 0.69 +0.5
278,375 - Psest_0262 0.69 +0.2
278,375 - Psest_0262 0.69 +0.6
278,375 - Psest_0262 0.69 +0.5
278,378 + Psest_0262 0.69 -1.0
278,378 + Psest_0262 0.69 -0.0
278,378 + Psest_0262 0.69 +0.4
278,378 + Psest_0262 0.69 -0.7
278,378 + Psest_0262 0.69 -1.9
278,378 + Psest_0262 0.69 +0.3
278,378 + Psest_0262 0.69 -0.6
278,378 + Psest_0262 0.69 -0.0
278,378 + Psest_0262 0.69 -0.1
278,378 + Psest_0262 0.69 +0.2
278,378 + Psest_0262 0.69 +0.3
278,378 + Psest_0262 0.69 -0.4
278,379 - Psest_0262 0.69 -0.5
278,379 - Psest_0262 0.69 +0.7
278,379 - Psest_0262 0.69 -0.7
278,379 - Psest_0262 0.69 -0.4
278,379 - Psest_0262 0.69 +0.0
278,379 - Psest_0262 0.69 +0.4
278,379 - Psest_0262 0.69 -1.1
278,379 - Psest_0262 0.69 -0.4
278,379 - Psest_0262 0.69 +0.1
278,379 - Psest_0262 0.69 -0.1
278,379 - Psest_0262 0.69 -0.4
278,379 - Psest_0262 0.69 -0.4
278,379 - Psest_0262 0.69 +0.6
278,379 - Psest_0262 0.69 +0.3
278,379 - Psest_0262 0.69 -0.2
278,379 - Psest_0262 0.69 +0.2
278,379 - Psest_0262 0.69 +0.8
278,379 - Psest_0262 0.69 +0.5
278,379 - Psest_0262 0.69 +0.6
278,379 - Psest_0262 0.69 +0.2
278,379 - Psest_0262 0.69 +0.4
278,379 - Psest_0262 0.69 +0.2
278,450 - Psest_0262 0.72 -0.4
278,450 - Psest_0262 0.72 +0.6
278,450 - Psest_0262 0.72 -0.4
278,512 + Psest_0262 0.75 -0.3
278,520 + Psest_0262 0.75 -0.1
278,521 - Psest_0262 0.75 +1.3
278,524 + Psest_0262 0.75 +1.8
278,524 + Psest_0262 0.75 +0.2
278,524 + Psest_0262 0.75 -0.2
278,524 + Psest_0262 0.75 +0.1
278,524 + Psest_0262 0.75 +0.4
278,524 + Psest_0262 0.75 -0.2
278,524 + Psest_0262 0.75 +0.2
278,525 - Psest_0262 0.75 +0.3
278,525 - Psest_0262 0.75 +0.6
278,525 - Psest_0262 0.75 -0.0
278,525 - Psest_0262 0.75 +1.3
278,525 - Psest_0262 0.75 +0.2
278,525 - Psest_0262 0.75 +0.6
278,567 + Psest_0262 0.77 -0.6
278,568 - Psest_0262 0.77 -0.2
278,647 + Psest_0262 0.80 +0.3
278,648 - Psest_0262 0.80 +0.0
278,648 - Psest_0262 0.80 +0.8
278,648 - Psest_0262 0.80 +0.2
278,648 - Psest_0262 0.80 -0.2
278,648 - Psest_0262 0.80 +0.7
278,648 - Psest_0262 0.80 -0.2
278,648 - Psest_0262 0.80 +0.4
278,711 + Psest_0262 0.82 -0.4
278,711 + Psest_0262 0.82 +1.9
278,711 + Psest_0262 0.82 -0.1
278,712 - Psest_0262 0.82 +0.9
278,713 + Psest_0262 0.82 -1.1
278,714 - Psest_0262 0.82 +0.8
278,714 - Psest_0262 0.82 -0.3
278,714 - Psest_0262 0.82 +1.6
278,714 - Psest_0262 0.82 +0.7
278,714 - Psest_0262 0.82 +0.9
278,872 + Psest_0262 0.89 +0.3
278,872 + Psest_0262 0.89 +1.5
278,872 + Psest_0262 0.89 -0.9
278,872 + Psest_0262 0.89 +0.3
278,872 + Psest_0262 0.89 +0.7
278,873 - Psest_0262 0.89 +0.2
278,873 - Psest_0262 0.89 +0.9
278,873 - Psest_0262 0.89 +0.8
278,873 - Psest_0262 0.89 +1.3
278,873 - Psest_0262 0.89 +1.9
278,873 - Psest_0262 0.89 +1.2
278,873 - Psest_0262 0.89 +0.3
278,873 - Psest_0262 0.89 +0.1
279,075 + +0.6
279,248 + +0.3
279,249 - +0.5
279,249 - +0.4
279,314 + -0.4
279,314 + +1.2
279,315 - +0.7
279,315 - -0.4
279,515 + -0.7
279,515 + -1.4
279,515 + -0.3
279,515 + +0.8
279,515 + -0.9
279,516 - +0.3
279,516 - +0.1
279,516 - +0.3
279,622 + Psest_0263 0.14 +0.3
279,622 + Psest_0263 0.14 +0.1
279,622 + Psest_0263 0.14 -0.2
279,623 - Psest_0263 0.14 -0.0
279,812 - Psest_0263 0.24 +0.8
279,958 + Psest_0263 0.32 -0.9
279,958 + Psest_0263 0.32 +1.9
279,958 + Psest_0263 0.32 +0.8
279,958 + Psest_0263 0.32 +1.0
280,074 + Psest_0263 0.38 -0.6
280,075 - Psest_0263 0.38 +0.3
280,075 - Psest_0263 0.38 +0.6
280,075 - Psest_0263 0.38 -0.0
280,086 + Psest_0263 0.38 +2.5

Or see this region's nucleotide sequence