Experiment: Def Cephalothin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0806 and Psest_0807 overlap by 4 nucleotides Psest_0807 and Psest_0808 overlap by 4 nucleotides Psest_0808 and Psest_0809 are separated by 244 nucleotides
Psest_0806: Psest_0806 - prepilin-type N-terminal cleavage/methylation domain, at 881,939 to 883,054
_0806
Psest_0807: Psest_0807 - type IV pilus modification protein PilV, at 883,051 to 883,620
_0807
Psest_0808: Psest_0808 - prepilin-type N-terminal cleavage/methylation domain, at 883,617 to 884,009
_0808
Psest_0809: Psest_0809 - Cytochrome c, mono- and diheme variants, at 884,254 to 885,765
_0809
Position (kb) 883
884
885 Strain fitness (log2 ratio) -2
-1
0
1
2 at 882.650 kb on + strand, within Psest_0806 at 882.672 kb on - strand, within Psest_0806 at 882.681 kb on + strand, within Psest_0806 at 882.717 kb on + strand, within Psest_0806 at 882.718 kb on - strand, within Psest_0806 at 882.736 kb on + strand, within Psest_0806 at 882.737 kb on - strand, within Psest_0806 at 882.737 kb on - strand, within Psest_0806 at 882.738 kb on + strand, within Psest_0806 at 882.739 kb on - strand, within Psest_0806 at 882.758 kb on + strand, within Psest_0806 at 882.792 kb on + strand, within Psest_0806 at 882.792 kb on + strand, within Psest_0806 at 882.940 kb on - strand, within Psest_0806 at 883.081 kb on + strand at 883.153 kb on + strand, within Psest_0807 at 883.154 kb on - strand, within Psest_0807 at 883.154 kb on - strand, within Psest_0807 at 883.211 kb on + strand, within Psest_0807 at 883.211 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.400 kb on + strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.401 kb on - strand, within Psest_0807 at 883.478 kb on + strand, within Psest_0807 at 883.478 kb on + strand, within Psest_0807 at 883.479 kb on - strand, within Psest_0807 at 883.479 kb on - strand, within Psest_0807 at 883.479 kb on - strand, within Psest_0807 at 883.479 kb on - strand, within Psest_0807 at 883.479 kb on - strand, within Psest_0807 at 883.711 kb on + strand, within Psest_0808 at 883.711 kb on + strand, within Psest_0808 at 883.740 kb on - strand, within Psest_0808 at 883.753 kb on + strand, within Psest_0808 at 883.754 kb on - strand, within Psest_0808 at 883.754 kb on - strand, within Psest_0808 at 883.796 kb on + strand, within Psest_0808 at 883.796 kb on + strand, within Psest_0808 at 883.797 kb on - strand, within Psest_0808 at 883.816 kb on + strand, within Psest_0808 at 883.816 kb on + strand, within Psest_0808 at 883.906 kb on + strand, within Psest_0808 at 883.906 kb on + strand, within Psest_0808 at 883.907 kb on - strand, within Psest_0808 at 883.907 kb on - strand, within Psest_0808 at 883.968 kb on + strand, within Psest_0808 at 883.968 kb on + strand, within Psest_0808 at 883.969 kb on - strand, within Psest_0808 at 883.969 kb on - strand, within Psest_0808 at 883.969 kb on - strand, within Psest_0808 at 883.969 kb on - strand, within Psest_0808 at 883.997 kb on + strand at 883.997 kb on + strand at 883.997 kb on + strand at 883.997 kb on + strand at 883.997 kb on + strand at 883.997 kb on + strand at 883.997 kb on + strand at 883.998 kb on - strand at 883.998 kb on - strand at 883.998 kb on - strand at 883.998 kb on - strand at 883.998 kb on - strand at 883.998 kb on - strand at 883.998 kb on - strand at 884.034 kb on + strand at 884.094 kb on - strand at 884.215 kb on + strand at 884.216 kb on - strand at 884.255 kb on + strand at 884.300 kb on + strand at 884.300 kb on + strand at 884.300 kb on + strand at 884.301 kb on - strand at 884.546 kb on + strand, within Psest_0809 at 884.629 kb on + strand, within Psest_0809 at 884.629 kb on + strand, within Psest_0809 at 884.696 kb on + strand, within Psest_0809 at 884.696 kb on + strand, within Psest_0809 at 884.696 kb on + strand, within Psest_0809 at 884.697 kb on - strand, within Psest_0809 at 884.697 kb on - strand, within Psest_0809 at 884.697 kb on - strand, within Psest_0809 at 884.697 kb on - strand, within Psest_0809 at 884.816 kb on + strand, within Psest_0809 at 884.816 kb on + strand, within Psest_0809 at 884.895 kb on - strand, within Psest_0809 at 884.963 kb on + strand, within Psest_0809 at 884.964 kb on - strand, within Psest_0809 at 884.964 kb on - strand, within Psest_0809 at 884.965 kb on + strand, within Psest_0809
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cephalothin 0.08 mg/ml remove 882,650 + Psest_0806 0.64 +2.4 882,672 - Psest_0806 0.66 +0.6 882,681 + Psest_0806 0.66 -0.4 882,717 + Psest_0806 0.70 +0.4 882,718 - Psest_0806 0.70 -1.4 882,736 + Psest_0806 0.71 -1.5 882,737 - Psest_0806 0.72 +0.2 882,737 - Psest_0806 0.72 +1.7 882,738 + Psest_0806 0.72 +0.1 882,739 - Psest_0806 0.72 -0.2 882,758 + Psest_0806 0.73 -0.7 882,792 + Psest_0806 0.76 +0.1 882,792 + Psest_0806 0.76 +0.7 882,940 - Psest_0806 0.90 +0.2 883,081 + -0.7 883,153 + Psest_0807 0.18 +0.3 883,154 - Psest_0807 0.18 -0.5 883,154 - Psest_0807 0.18 +0.3 883,211 + Psest_0807 0.28 +0.1 883,211 + Psest_0807 0.28 -0.7 883,400 + Psest_0807 0.61 -0.9 883,400 + Psest_0807 0.61 -0.4 883,400 + Psest_0807 0.61 +0.8 883,400 + Psest_0807 0.61 -0.2 883,400 + Psest_0807 0.61 +0.6 883,400 + Psest_0807 0.61 -1.2 883,400 + Psest_0807 0.61 +1.5 883,400 + Psest_0807 0.61 -0.8 883,400 + Psest_0807 0.61 -0.3 883,400 + Psest_0807 0.61 +0.1 883,400 + Psest_0807 0.61 -1.5 883,401 - Psest_0807 0.61 +1.2 883,401 - Psest_0807 0.61 -1.6 883,401 - Psest_0807 0.61 -1.8 883,401 - Psest_0807 0.61 +0.6 883,401 - Psest_0807 0.61 +1.5 883,401 - Psest_0807 0.61 -0.5 883,401 - Psest_0807 0.61 -0.6 883,401 - Psest_0807 0.61 +0.1 883,401 - Psest_0807 0.61 +0.8 883,401 - Psest_0807 0.61 +0.6 883,401 - Psest_0807 0.61 -0.9 883,478 + Psest_0807 0.75 +2.1 883,478 + Psest_0807 0.75 +0.1 883,479 - Psest_0807 0.75 +1.4 883,479 - Psest_0807 0.75 -0.0 883,479 - Psest_0807 0.75 +1.8 883,479 - Psest_0807 0.75 +0.0 883,479 - Psest_0807 0.75 +1.2 883,711 + Psest_0808 0.24 +0.3 883,711 + Psest_0808 0.24 +1.2 883,740 - Psest_0808 0.31 -0.3 883,753 + Psest_0808 0.35 -0.3 883,754 - Psest_0808 0.35 +0.1 883,754 - Psest_0808 0.35 +1.1 883,796 + Psest_0808 0.46 +0.1 883,796 + Psest_0808 0.46 +2.4 883,797 - Psest_0808 0.46 -0.5 883,816 + Psest_0808 0.51 +1.1 883,816 + Psest_0808 0.51 -0.9 883,906 + Psest_0808 0.74 +1.5 883,906 + Psest_0808 0.74 +0.1 883,907 - Psest_0808 0.74 +0.9 883,907 - Psest_0808 0.74 +2.1 883,968 + Psest_0808 0.89 -0.1 883,968 + Psest_0808 0.89 -0.4 883,969 - Psest_0808 0.90 +1.3 883,969 - Psest_0808 0.90 -0.2 883,969 - Psest_0808 0.90 +0.3 883,969 - Psest_0808 0.90 +1.0 883,997 + -1.8 883,997 + +0.6 883,997 + +1.0 883,997 + +1.7 883,997 + +1.1 883,997 + +0.2 883,997 + -0.2 883,998 - +1.1 883,998 - -0.5 883,998 - +0.5 883,998 - +0.0 883,998 - -1.5 883,998 - -1.3 883,998 - -0.2 884,034 + +0.9 884,094 - +0.7 884,215 + -1.8 884,216 - -0.7 884,255 + +0.7 884,300 + +0.5 884,300 + -1.3 884,300 + +0.8 884,301 - +0.6 884,546 + Psest_0809 0.19 -0.6 884,629 + Psest_0809 0.25 -0.2 884,629 + Psest_0809 0.25 -0.3 884,696 + Psest_0809 0.29 +1.9 884,696 + Psest_0809 0.29 +0.2 884,696 + Psest_0809 0.29 -1.0 884,697 - Psest_0809 0.29 -2.4 884,697 - Psest_0809 0.29 -1.4 884,697 - Psest_0809 0.29 +1.2 884,697 - Psest_0809 0.29 +2.5 884,816 + Psest_0809 0.37 -2.1 884,816 + Psest_0809 0.37 -0.1 884,895 - Psest_0809 0.42 -0.0 884,963 + Psest_0809 0.47 -2.6 884,964 - Psest_0809 0.47 +0.3 884,964 - Psest_0809 0.47 +0.2 884,965 + Psest_0809 0.47 -0.1
Or see this region's nucleotide sequence