Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0669

Experiment: Def Cephalothin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0667 and Psest_0668 are separated by 6 nucleotidesPsest_0668 and Psest_0669 are separated by 85 nucleotidesPsest_0669 and Psest_0670 are separated by 14 nucleotides Psest_0667: Psest_0667 - Phosphodiesterase/alkaline phosphatase D, at 726,330 to 727,883 _0667 Psest_0668: Psest_0668 - Ethanolamine ammonia-lyase, small subunit, at 727,890 to 728,684 _0668 Psest_0669: Psest_0669 - Ethanolamine ammonia-lyase, large subunit, at 728,770 to 730,161 _0669 Psest_0670: Psest_0670 - ethanolamine permease, at 730,176 to 731,624 _0670 Position (kb) 728 729 730 731Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 727.817 kb on - strandat 727.817 kb on - strandat 727.849 kb on - strandat 727.938 kb on + strandat 727.962 kb on + strandat 728.002 kb on + strand, within Psest_0668at 728.002 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.030 kb on - strand, within Psest_0668at 728.030 kb on - strand, within Psest_0668at 728.030 kb on - strand, within Psest_0668at 728.110 kb on + strand, within Psest_0668at 728.110 kb on + strand, within Psest_0668at 728.110 kb on + strand, within Psest_0668at 728.110 kb on + strand, within Psest_0668at 728.111 kb on - strand, within Psest_0668at 728.111 kb on - strand, within Psest_0668at 728.111 kb on - strand, within Psest_0668at 728.111 kb on - strand, within Psest_0668at 728.111 kb on - strand, within Psest_0668at 728.434 kb on + strand, within Psest_0668at 728.434 kb on + strand, within Psest_0668at 728.434 kb on + strand, within Psest_0668at 728.434 kb on + strand, within Psest_0668at 728.435 kb on - strandat 728.483 kb on + strand, within Psest_0668at 728.483 kb on + strand, within Psest_0668at 728.483 kb on + strand, within Psest_0668at 728.484 kb on - strand, within Psest_0668at 728.484 kb on - strand, within Psest_0668at 728.688 kb on + strandat 728.918 kb on + strand, within Psest_0669at 728.918 kb on + strand, within Psest_0669at 728.918 kb on + strand, within Psest_0669at 728.918 kb on + strand, within Psest_0669at 728.918 kb on + strand, within Psest_0669at 728.918 kb on + strand, within Psest_0669at 728.919 kb on - strand, within Psest_0669at 728.919 kb on - strand, within Psest_0669at 728.919 kb on - strand, within Psest_0669at 728.919 kb on - strand, within Psest_0669at 728.919 kb on - strand, within Psest_0669at 728.948 kb on + strand, within Psest_0669at 729.066 kb on - strand, within Psest_0669at 729.066 kb on - strand, within Psest_0669at 729.152 kb on + strand, within Psest_0669at 729.152 kb on + strand, within Psest_0669at 729.153 kb on - strand, within Psest_0669at 729.158 kb on + strand, within Psest_0669at 729.158 kb on + strand, within Psest_0669at 729.158 kb on + strand, within Psest_0669at 729.158 kb on + strand, within Psest_0669at 729.159 kb on - strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.207 kb on - strand, within Psest_0669at 729.207 kb on - strand, within Psest_0669at 729.207 kb on - strand, within Psest_0669at 729.224 kb on + strand, within Psest_0669at 729.305 kb on + strand, within Psest_0669at 729.305 kb on + strand, within Psest_0669at 729.306 kb on - strand, within Psest_0669at 729.357 kb on - strand, within Psest_0669at 729.357 kb on - strand, within Psest_0669at 730.255 kb on + strandat 730.255 kb on + strandat 730.255 kb on + strandat 730.255 kb on + strandat 730.256 kb on - strandat 730.256 kb on - strandat 730.256 kb on - strandat 730.267 kb on + strandat 730.268 kb on - strandat 730.285 kb on + strandat 730.285 kb on + strandat 730.285 kb on + strandat 730.285 kb on + strandat 730.286 kb on - strandat 730.286 kb on - strandat 730.286 kb on - strandat 730.286 kb on - strandat 730.286 kb on - strandat 730.399 kb on + strand, within Psest_0670at 730.462 kb on + strand, within Psest_0670at 730.462 kb on + strand, within Psest_0670at 730.462 kb on + strand, within Psest_0670at 730.463 kb on - strand, within Psest_0670at 730.463 kb on - strand, within Psest_0670at 730.463 kb on - strand, within Psest_0670at 730.463 kb on - strand, within Psest_0670at 730.463 kb on - strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.652 kb on - strand, within Psest_0670at 730.652 kb on - strand, within Psest_0670at 730.652 kb on - strand, within Psest_0670at 730.652 kb on - strand, within Psest_0670at 730.652 kb on - strand, within Psest_0670at 730.839 kb on + strand, within Psest_0670at 730.972 kb on + strand, within Psest_0670at 730.978 kb on + strand, within Psest_0670at 731.141 kb on + strand, within Psest_0670at 731.142 kb on - strand, within Psest_0670at 731.142 kb on - strand, within Psest_0670at 731.142 kb on - strand, within Psest_0670

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Cephalothin 0.08 mg/ml
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727,817 - -0.9
727,817 - +0.0
727,849 - -0.3
727,938 + +1.7
727,962 + -0.1
728,002 + Psest_0668 0.14 -1.1
728,002 + Psest_0668 0.14 -0.2
728,029 + Psest_0668 0.17 -2.1
728,029 + Psest_0668 0.17 -0.5
728,029 + Psest_0668 0.17 -1.1
728,029 + Psest_0668 0.17 +0.9
728,029 + Psest_0668 0.17 +0.5
728,029 + Psest_0668 0.17 -2.0
728,029 + Psest_0668 0.17 -0.8
728,030 - Psest_0668 0.18 -0.6
728,030 - Psest_0668 0.18 -0.9
728,030 - Psest_0668 0.18 -1.1
728,110 + Psest_0668 0.28 -0.6
728,110 + Psest_0668 0.28 -0.9
728,110 + Psest_0668 0.28 -1.3
728,110 + Psest_0668 0.28 -0.1
728,111 - Psest_0668 0.28 -0.3
728,111 - Psest_0668 0.28 +0.4
728,111 - Psest_0668 0.28 -0.6
728,111 - Psest_0668 0.28 -0.2
728,111 - Psest_0668 0.28 -1.1
728,434 + Psest_0668 0.68 +1.1
728,434 + Psest_0668 0.68 -0.9
728,434 + Psest_0668 0.68 +1.0
728,434 + Psest_0668 0.68 -0.6
728,435 - +0.7
728,483 + Psest_0668 0.75 +0.1
728,483 + Psest_0668 0.75 +1.7
728,483 + Psest_0668 0.75 -0.3
728,484 - Psest_0668 0.75 -0.5
728,484 - Psest_0668 0.75 +0.1
728,688 + -1.5
728,918 + Psest_0669 0.11 -1.0
728,918 + Psest_0669 0.11 -0.3
728,918 + Psest_0669 0.11 +1.3
728,918 + Psest_0669 0.11 -1.4
728,918 + Psest_0669 0.11 +1.3
728,918 + Psest_0669 0.11 +0.7
728,919 - Psest_0669 0.11 -0.4
728,919 - Psest_0669 0.11 -0.5
728,919 - Psest_0669 0.11 -0.3
728,919 - Psest_0669 0.11 -3.3
728,919 - Psest_0669 0.11 -0.5
728,948 + Psest_0669 0.13 +0.3
729,066 - Psest_0669 0.21 +1.7
729,066 - Psest_0669 0.21 -0.6
729,152 + Psest_0669 0.27 +1.7
729,152 + Psest_0669 0.27 +0.4
729,153 - Psest_0669 0.28 -0.6
729,158 + Psest_0669 0.28 -0.6
729,158 + Psest_0669 0.28 -1.3
729,158 + Psest_0669 0.28 -0.4
729,158 + Psest_0669 0.28 +0.3
729,159 - Psest_0669 0.28 +0.7
729,206 + Psest_0669 0.31 -0.3
729,206 + Psest_0669 0.31 -0.1
729,206 + Psest_0669 0.31 +0.7
729,206 + Psest_0669 0.31 -1.6
729,207 - Psest_0669 0.31 -0.9
729,207 - Psest_0669 0.31 -0.6
729,207 - Psest_0669 0.31 +0.7
729,224 + Psest_0669 0.33 -1.3
729,305 + Psest_0669 0.38 -0.5
729,305 + Psest_0669 0.38 -1.7
729,306 - Psest_0669 0.39 +0.1
729,357 - Psest_0669 0.42 -0.0
729,357 - Psest_0669 0.42 -0.1
730,255 + -0.0
730,255 + +3.4
730,255 + -0.4
730,255 + -0.4
730,256 - -0.6
730,256 - -1.0
730,256 - +1.1
730,267 + +0.2
730,268 - -0.9
730,285 + +0.1
730,285 + +1.0
730,285 + -0.9
730,285 + +0.4
730,286 - -0.3
730,286 - -0.9
730,286 - +0.5
730,286 - -0.3
730,286 - -0.6
730,399 + Psest_0670 0.15 -0.6
730,462 + Psest_0670 0.20 -0.3
730,462 + Psest_0670 0.20 +1.0
730,462 + Psest_0670 0.20 +1.3
730,463 - Psest_0670 0.20 -1.1
730,463 - Psest_0670 0.20 +0.1
730,463 - Psest_0670 0.20 +1.7
730,463 - Psest_0670 0.20 -0.1
730,463 - Psest_0670 0.20 -0.1
730,651 + Psest_0670 0.33 -0.5
730,651 + Psest_0670 0.33 +0.5
730,651 + Psest_0670 0.33 -0.1
730,651 + Psest_0670 0.33 -0.0
730,651 + Psest_0670 0.33 +1.6
730,651 + Psest_0670 0.33 -2.7
730,651 + Psest_0670 0.33 -0.2
730,652 - Psest_0670 0.33 +0.7
730,652 - Psest_0670 0.33 +0.1
730,652 - Psest_0670 0.33 +0.7
730,652 - Psest_0670 0.33 -0.9
730,652 - Psest_0670 0.33 -1.5
730,839 + Psest_0670 0.46 +0.2
730,972 + Psest_0670 0.55 -0.6
730,978 + Psest_0670 0.55 +0.4
731,141 + Psest_0670 0.67 -0.3
731,142 - Psest_0670 0.67 +0.5
731,142 - Psest_0670 0.67 +0.4
731,142 - Psest_0670 0.67 -1.2

Or see this region's nucleotide sequence