Experiment: Def Cephalothin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3374 and Psest_3375 overlap by 4 nucleotides Psest_3375 and Psest_3376 are separated by 53 nucleotides Psest_3376 and Psest_3377 are separated by 119 nucleotides Psest_3377 and Psest_3378 overlap by 8 nucleotides
Psest_3374: Psest_3374 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 3,541,786 to 3,545,556
_3374
Psest_3375: Psest_3375 - prepilin-type N-terminal cleavage/methylation domain, at 3,545,553 to 3,545,999
_3375
Psest_3376: Psest_3376 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming), at 3,546,053 to 3,546,997
_3376
Psest_3377: Psest_3377 - FKBP-type peptidyl-prolyl cis-trans isomerases 2, at 3,547,117 to 3,547,554
_3377
Psest_3378: Psest_3378 - lipoprotein signal peptidase, at 3,547,547 to 3,548,050
_3378
Position (kb)
3546
3547 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3545.275 kb on + strand at 3545.317 kb on + strand at 3545.404 kb on - strand at 3545.670 kb on + strand, within Psest_3375 at 3545.670 kb on + strand, within Psest_3375 at 3545.670 kb on + strand, within Psest_3375 at 3545.670 kb on + strand, within Psest_3375 at 3545.670 kb on + strand, within Psest_3375 at 3545.670 kb on + strand, within Psest_3375 at 3545.670 kb on + strand, within Psest_3375 at 3545.670 kb on + strand, within Psest_3375 at 3545.671 kb on - strand, within Psest_3375 at 3545.671 kb on - strand, within Psest_3375 at 3545.742 kb on + strand, within Psest_3375 at 3545.742 kb on + strand, within Psest_3375 at 3545.742 kb on + strand, within Psest_3375 at 3545.742 kb on + strand, within Psest_3375 at 3545.760 kb on + strand, within Psest_3375 at 3545.760 kb on + strand, within Psest_3375 at 3545.760 kb on + strand, within Psest_3375 at 3545.760 kb on + strand, within Psest_3375 at 3545.764 kb on + strand, within Psest_3375 at 3545.764 kb on + strand, within Psest_3375 at 3545.832 kb on + strand, within Psest_3375 at 3545.832 kb on + strand, within Psest_3375 at 3545.833 kb on - strand, within Psest_3375 at 3545.870 kb on + strand, within Psest_3375 at 3545.870 kb on + strand, within Psest_3375 at 3545.870 kb on + strand, within Psest_3375 at 3545.870 kb on + strand, within Psest_3375 at 3545.870 kb on + strand, within Psest_3375 at 3545.870 kb on + strand, within Psest_3375 at 3545.870 kb on + strand, within Psest_3375 at 3545.871 kb on - strand, within Psest_3375 at 3545.871 kb on - strand, within Psest_3375 at 3545.871 kb on - strand, within Psest_3375 at 3545.874 kb on + strand, within Psest_3375 at 3545.875 kb on - strand, within Psest_3375 at 3545.875 kb on - strand, within Psest_3375 at 3545.875 kb on - strand, within Psest_3375 at 3545.875 kb on - strand, within Psest_3375 at 3545.875 kb on - strand, within Psest_3375 at 3547.038 kb on + strand at 3547.038 kb on + strand at 3547.397 kb on + strand, within Psest_3377
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cephalothin 0.08 mg/ml remove 3,545,275 + -2.6 3,545,317 + -1.1 3,545,404 - +0.0 3,545,670 + Psest_3375 0.26 +1.6 3,545,670 + Psest_3375 0.26 +0.0 3,545,670 + Psest_3375 0.26 +0.9 3,545,670 + Psest_3375 0.26 +1.8 3,545,670 + Psest_3375 0.26 +1.1 3,545,670 + Psest_3375 0.26 -0.7 3,545,670 + Psest_3375 0.26 -0.3 3,545,670 + Psest_3375 0.26 +0.7 3,545,671 - Psest_3375 0.26 +2.5 3,545,671 - Psest_3375 0.26 -1.0 3,545,742 + Psest_3375 0.42 -1.0 3,545,742 + Psest_3375 0.42 +0.7 3,545,742 + Psest_3375 0.42 +0.9 3,545,742 + Psest_3375 0.42 -1.5 3,545,760 + Psest_3375 0.46 -0.7 3,545,760 + Psest_3375 0.46 -0.3 3,545,760 + Psest_3375 0.46 +2.0 3,545,760 + Psest_3375 0.46 +0.2 3,545,764 + Psest_3375 0.47 -0.3 3,545,764 + Psest_3375 0.47 -2.0 3,545,832 + Psest_3375 0.62 +0.5 3,545,832 + Psest_3375 0.62 -0.6 3,545,833 - Psest_3375 0.63 +1.1 3,545,870 + Psest_3375 0.71 +0.6 3,545,870 + Psest_3375 0.71 -1.0 3,545,870 + Psest_3375 0.71 +0.5 3,545,870 + Psest_3375 0.71 +0.5 3,545,870 + Psest_3375 0.71 -0.7 3,545,870 + Psest_3375 0.71 +0.3 3,545,870 + Psest_3375 0.71 -1.0 3,545,871 - Psest_3375 0.71 +0.0 3,545,871 - Psest_3375 0.71 +1.6 3,545,871 - Psest_3375 0.71 +1.2 3,545,874 + Psest_3375 0.72 -0.1 3,545,875 - Psest_3375 0.72 -0.1 3,545,875 - Psest_3375 0.72 -0.7 3,545,875 - Psest_3375 0.72 -1.8 3,545,875 - Psest_3375 0.72 -0.6 3,545,875 - Psest_3375 0.72 -1.4 3,547,038 + +0.0 3,547,038 + +0.6 3,547,397 + Psest_3377 0.64 -1.5
Or see this region's nucleotide sequence