Experiment: Def Cephalothin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2816 and Psest_2817 are separated by 154 nucleotides Psest_2817 and Psest_2818 are separated by 137 nucleotides Psest_2818 and Psest_2819 are separated by 76 nucleotides
Psest_2816: Psest_2816 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 3,004,047 to 3,005,162
_2816
Psest_2817: Psest_2817 - Transcriptional regulator, at 3,005,317 to 3,006,216
_2817
Psest_2818: Psest_2818 - Ribosome-associated protein Y (PSrp-1), at 3,006,354 to 3,006,668
_2818
Psest_2819: Psest_2819 - hypothetical protein, at 3,006,745 to 3,007,911
_2819
Position (kb)
3005
3006
3007 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3004.382 kb on - strand, within Psest_2816 at 3004.617 kb on - strand, within Psest_2816 at 3004.617 kb on - strand, within Psest_2816 at 3004.726 kb on + strand, within Psest_2816 at 3004.726 kb on + strand, within Psest_2816 at 3004.727 kb on - strand, within Psest_2816 at 3004.727 kb on - strand, within Psest_2816 at 3004.752 kb on - strand, within Psest_2816 at 3004.752 kb on - strand, within Psest_2816 at 3004.754 kb on - strand, within Psest_2816 at 3004.754 kb on - strand, within Psest_2816 at 3004.754 kb on - strand, within Psest_2816 at 3004.754 kb on - strand, within Psest_2816 at 3004.754 kb on - strand, within Psest_2816 at 3004.754 kb on - strand, within Psest_2816 at 3004.754 kb on - strand, within Psest_2816 at 3004.754 kb on - strand, within Psest_2816 at 3004.759 kb on + strand, within Psest_2816 at 3004.760 kb on - strand, within Psest_2816 at 3004.760 kb on - strand, within Psest_2816 at 3004.777 kb on + strand, within Psest_2816 at 3004.895 kb on - strand, within Psest_2816 at 3005.024 kb on - strand, within Psest_2816 at 3005.034 kb on - strand, within Psest_2816 at 3005.200 kb on + strand at 3005.200 kb on + strand at 3005.201 kb on - strand at 3005.312 kb on + strand at 3005.534 kb on + strand, within Psest_2817 at 3005.535 kb on - strand, within Psest_2817 at 3005.806 kb on + strand, within Psest_2817 at 3005.806 kb on + strand, within Psest_2817 at 3005.806 kb on + strand, within Psest_2817 at 3005.806 kb on + strand, within Psest_2817 at 3005.806 kb on + strand, within Psest_2817 at 3005.806 kb on + strand, within Psest_2817 at 3005.807 kb on - strand, within Psest_2817 at 3005.807 kb on - strand, within Psest_2817 at 3005.807 kb on - strand, within Psest_2817 at 3005.807 kb on - strand, within Psest_2817 at 3005.807 kb on - strand, within Psest_2817 at 3005.807 kb on - strand, within Psest_2817 at 3005.807 kb on - strand, within Psest_2817 at 3005.807 kb on - strand, within Psest_2817 at 3005.807 kb on - strand, within Psest_2817 at 3005.827 kb on + strand, within Psest_2817 at 3005.827 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.853 kb on + strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3005.854 kb on - strand, within Psest_2817 at 3006.029 kb on - strand, within Psest_2817 at 3006.029 kb on - strand, within Psest_2817 at 3006.031 kb on + strand, within Psest_2817 at 3006.031 kb on + strand, within Psest_2817 at 3006.031 kb on + strand, within Psest_2817 at 3006.031 kb on + strand, within Psest_2817 at 3006.032 kb on - strand, within Psest_2817 at 3006.032 kb on - strand, within Psest_2817 at 3006.032 kb on - strand, within Psest_2817 at 3006.196 kb on + strand at 3006.196 kb on + strand at 3006.196 kb on + strand at 3006.197 kb on - strand at 3006.282 kb on + strand at 3006.283 kb on - strand at 3006.291 kb on + strand at 3006.291 kb on + strand at 3006.291 kb on + strand at 3006.291 kb on + strand at 3006.291 kb on + strand at 3006.291 kb on + strand at 3006.292 kb on - strand at 3006.292 kb on - strand at 3006.292 kb on - strand at 3006.730 kb on + strand at 3006.731 kb on - strand at 3006.731 kb on - strand at 3006.818 kb on - strand at 3006.953 kb on - strand, within Psest_2819 at 3007.024 kb on + strand, within Psest_2819 at 3007.075 kb on - strand, within Psest_2819 at 3007.199 kb on + strand, within Psest_2819 at 3007.199 kb on + strand, within Psest_2819 at 3007.199 kb on + strand, within Psest_2819 at 3007.200 kb on - strand, within Psest_2819 at 3007.200 kb on - strand, within Psest_2819 at 3007.200 kb on - strand, within Psest_2819 at 3007.200 kb on - strand, within Psest_2819 at 3007.200 kb on - strand, within Psest_2819 at 3007.200 kb on - strand, within Psest_2819 at 3007.200 kb on - strand, within Psest_2819
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cephalothin 0.08 mg/ml remove 3,004,382 - Psest_2816 0.30 -0.1 3,004,617 - Psest_2816 0.51 -0.9 3,004,617 - Psest_2816 0.51 -1.0 3,004,726 + Psest_2816 0.61 -0.6 3,004,726 + Psest_2816 0.61 -1.5 3,004,727 - Psest_2816 0.61 +0.4 3,004,727 - Psest_2816 0.61 +0.8 3,004,752 - Psest_2816 0.63 -0.6 3,004,752 - Psest_2816 0.63 +0.8 3,004,754 - Psest_2816 0.63 -0.7 3,004,754 - Psest_2816 0.63 -0.3 3,004,754 - Psest_2816 0.63 -0.7 3,004,754 - Psest_2816 0.63 -0.3 3,004,754 - Psest_2816 0.63 -0.5 3,004,754 - Psest_2816 0.63 +1.0 3,004,754 - Psest_2816 0.63 -0.2 3,004,754 - Psest_2816 0.63 +0.6 3,004,759 + Psest_2816 0.64 -0.2 3,004,760 - Psest_2816 0.64 -2.4 3,004,760 - Psest_2816 0.64 -0.9 3,004,777 + Psest_2816 0.65 -0.3 3,004,895 - Psest_2816 0.76 +0.6 3,005,024 - Psest_2816 0.88 -0.5 3,005,034 - Psest_2816 0.88 +0.4 3,005,200 + +0.3 3,005,200 + -0.3 3,005,201 - +0.1 3,005,312 + -0.0 3,005,534 + Psest_2817 0.24 +0.0 3,005,535 - Psest_2817 0.24 -1.4 3,005,806 + Psest_2817 0.54 -1.0 3,005,806 + Psest_2817 0.54 -1.0 3,005,806 + Psest_2817 0.54 +0.3 3,005,806 + Psest_2817 0.54 -0.5 3,005,806 + Psest_2817 0.54 -1.1 3,005,806 + Psest_2817 0.54 -1.4 3,005,807 - Psest_2817 0.54 +1.5 3,005,807 - Psest_2817 0.54 +0.9 3,005,807 - Psest_2817 0.54 +0.3 3,005,807 - Psest_2817 0.54 +0.4 3,005,807 - Psest_2817 0.54 +1.0 3,005,807 - Psest_2817 0.54 -1.1 3,005,807 - Psest_2817 0.54 +0.7 3,005,807 - Psest_2817 0.54 -1.5 3,005,807 - Psest_2817 0.54 -1.1 3,005,827 + Psest_2817 0.57 -1.1 3,005,827 + Psest_2817 0.57 -0.4 3,005,853 + Psest_2817 0.60 -0.6 3,005,853 + Psest_2817 0.60 -1.6 3,005,853 + Psest_2817 0.60 +0.3 3,005,853 + Psest_2817 0.60 -0.5 3,005,853 + Psest_2817 0.60 -0.5 3,005,853 + Psest_2817 0.60 -2.0 3,005,853 + Psest_2817 0.60 -0.4 3,005,853 + Psest_2817 0.60 +0.5 3,005,853 + Psest_2817 0.60 -2.1 3,005,853 + Psest_2817 0.60 -2.6 3,005,853 + Psest_2817 0.60 -0.7 3,005,853 + Psest_2817 0.60 -1.2 3,005,853 + Psest_2817 0.60 -1.5 3,005,853 + Psest_2817 0.60 +0.7 3,005,853 + Psest_2817 0.60 -1.3 3,005,853 + Psest_2817 0.60 -0.8 3,005,853 + Psest_2817 0.60 -0.6 3,005,854 - Psest_2817 0.60 -0.9 3,005,854 - Psest_2817 0.60 +1.1 3,005,854 - Psest_2817 0.60 +0.4 3,005,854 - Psest_2817 0.60 -2.5 3,005,854 - Psest_2817 0.60 -1.0 3,005,854 - Psest_2817 0.60 +0.5 3,005,854 - Psest_2817 0.60 -0.2 3,005,854 - Psest_2817 0.60 -0.0 3,005,854 - Psest_2817 0.60 +0.0 3,005,854 - Psest_2817 0.60 +0.3 3,005,854 - Psest_2817 0.60 +0.5 3,005,854 - Psest_2817 0.60 -1.3 3,005,854 - Psest_2817 0.60 -0.9 3,005,854 - Psest_2817 0.60 -1.6 3,005,854 - Psest_2817 0.60 -0.1 3,005,854 - Psest_2817 0.60 -0.6 3,005,854 - Psest_2817 0.60 -0.5 3,005,854 - Psest_2817 0.60 +0.1 3,005,854 - Psest_2817 0.60 +0.5 3,005,854 - Psest_2817 0.60 -1.2 3,005,854 - Psest_2817 0.60 -0.0 3,005,854 - Psest_2817 0.60 -1.4 3,005,854 - Psest_2817 0.60 +0.7 3,005,854 - Psest_2817 0.60 +1.3 3,005,854 - Psest_2817 0.60 +0.1 3,005,854 - Psest_2817 0.60 -0.7 3,005,854 - Psest_2817 0.60 +0.1 3,005,854 - Psest_2817 0.60 +0.4 3,005,854 - Psest_2817 0.60 -0.3 3,005,854 - Psest_2817 0.60 +1.2 3,005,854 - Psest_2817 0.60 -0.4 3,005,854 - Psest_2817 0.60 -0.6 3,005,854 - Psest_2817 0.60 -0.7 3,005,854 - Psest_2817 0.60 +0.3 3,005,854 - Psest_2817 0.60 +1.1 3,005,854 - Psest_2817 0.60 +0.4 3,006,029 - Psest_2817 0.79 -0.0 3,006,029 - Psest_2817 0.79 +0.5 3,006,031 + Psest_2817 0.79 -2.6 3,006,031 + Psest_2817 0.79 -0.7 3,006,031 + Psest_2817 0.79 -0.3 3,006,031 + Psest_2817 0.79 -1.4 3,006,032 - Psest_2817 0.79 -0.5 3,006,032 - Psest_2817 0.79 -0.3 3,006,032 - Psest_2817 0.79 +0.1 3,006,196 + -1.5 3,006,196 + -0.4 3,006,196 + -0.1 3,006,197 - +0.4 3,006,282 + -0.4 3,006,283 - -0.2 3,006,291 + -0.6 3,006,291 + +0.3 3,006,291 + -2.2 3,006,291 + +0.6 3,006,291 + +0.2 3,006,291 + -1.9 3,006,292 - -0.7 3,006,292 - -0.7 3,006,292 - -1.0 3,006,730 + +2.0 3,006,731 - -0.1 3,006,731 - -2.3 3,006,818 - +1.1 3,006,953 - Psest_2819 0.18 -0.6 3,007,024 + Psest_2819 0.24 -1.9 3,007,075 - Psest_2819 0.28 -0.5 3,007,199 + Psest_2819 0.39 -2.7 3,007,199 + Psest_2819 0.39 +0.3 3,007,199 + Psest_2819 0.39 -0.5 3,007,200 - Psest_2819 0.39 -0.2 3,007,200 - Psest_2819 0.39 -0.6 3,007,200 - Psest_2819 0.39 -1.7 3,007,200 - Psest_2819 0.39 -0.8 3,007,200 - Psest_2819 0.39 -0.0 3,007,200 - Psest_2819 0.39 +0.0 3,007,200 - Psest_2819 0.39 -0.1
Or see this region's nucleotide sequence