Experiment: Def Cephalothin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2659 and Psest_2660 are separated by 176 nucleotides Psest_2660 and Psest_2661 are separated by 200 nucleotides
Psest_2659: Psest_2659 - Transcriptional regulator, at 2,845,565 to 2,846,464
_2659
Psest_2660: Psest_2660 - Predicted acyl-CoA transferases/carnitine dehydratase, at 2,846,641 to 2,847,843
_2660
Psest_2661: Psest_2661 - Isopropylmalate/homocitrate/citramalate synthases, at 2,848,044 to 2,848,979
_2661
Position (kb)
2846
2847
2848 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2845.694 kb on + strand, within Psest_2659 at 2845.695 kb on - strand, within Psest_2659 at 2845.713 kb on + strand, within Psest_2659 at 2845.713 kb on + strand, within Psest_2659 at 2845.714 kb on - strand, within Psest_2659 at 2845.714 kb on - strand, within Psest_2659 at 2846.008 kb on + strand, within Psest_2659 at 2846.008 kb on + strand, within Psest_2659 at 2846.008 kb on + strand, within Psest_2659 at 2846.008 kb on + strand, within Psest_2659 at 2846.122 kb on + strand, within Psest_2659 at 2846.122 kb on + strand, within Psest_2659 at 2846.122 kb on + strand, within Psest_2659 at 2846.123 kb on - strand, within Psest_2659 at 2846.123 kb on - strand, within Psest_2659 at 2846.161 kb on + strand, within Psest_2659 at 2846.161 kb on + strand, within Psest_2659 at 2846.161 kb on + strand, within Psest_2659 at 2846.190 kb on - strand, within Psest_2659 at 2846.478 kb on - strand at 2847.090 kb on + strand, within Psest_2660 at 2847.090 kb on + strand, within Psest_2660 at 2847.090 kb on + strand, within Psest_2660 at 2847.090 kb on + strand, within Psest_2660 at 2847.091 kb on - strand, within Psest_2660 at 2847.091 kb on - strand, within Psest_2660 at 2847.178 kb on + strand, within Psest_2660 at 2847.194 kb on + strand, within Psest_2660 at 2847.298 kb on + strand, within Psest_2660 at 2847.299 kb on - strand, within Psest_2660 at 2847.317 kb on + strand, within Psest_2660 at 2847.389 kb on - strand, within Psest_2660 at 2847.389 kb on - strand, within Psest_2660 at 2847.389 kb on - strand, within Psest_2660 at 2847.389 kb on - strand, within Psest_2660 at 2847.421 kb on + strand, within Psest_2660 at 2847.421 kb on + strand, within Psest_2660 at 2847.421 kb on + strand, within Psest_2660 at 2847.421 kb on + strand, within Psest_2660 at 2847.421 kb on + strand, within Psest_2660 at 2847.421 kb on + strand, within Psest_2660 at 2847.421 kb on + strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.422 kb on - strand, within Psest_2660 at 2847.608 kb on - strand, within Psest_2660 at 2847.609 kb on + strand, within Psest_2660 at 2847.640 kb on + strand, within Psest_2660 at 2847.641 kb on - strand, within Psest_2660 at 2847.779 kb on + strand at 2847.923 kb on + strand at 2847.930 kb on + strand at 2847.930 kb on + strand at 2847.931 kb on - strand at 2847.931 kb on - strand at 2847.931 kb on - strand at 2847.931 kb on - strand at 2847.931 kb on - strand at 2847.931 kb on - strand at 2847.942 kb on + strand at 2847.942 kb on + strand at 2847.942 kb on + strand at 2847.943 kb on - strand at 2848.059 kb on + strand at 2848.059 kb on + strand at 2848.059 kb on + strand at 2848.059 kb on + strand at 2848.059 kb on + strand at 2848.059 kb on + strand at 2848.059 kb on + strand at 2848.059 kb on + strand at 2848.059 kb on + strand at 2848.059 kb on + strand at 2848.059 kb on + strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.060 kb on - strand at 2848.266 kb on + strand, within Psest_2661 at 2848.267 kb on - strand, within Psest_2661 at 2848.420 kb on + strand, within Psest_2661 at 2848.420 kb on + strand, within Psest_2661 at 2848.420 kb on + strand, within Psest_2661 at 2848.420 kb on + strand, within Psest_2661 at 2848.420 kb on + strand, within Psest_2661 at 2848.421 kb on - strand, within Psest_2661 at 2848.515 kb on + strand, within Psest_2661 at 2848.515 kb on + strand, within Psest_2661 at 2848.515 kb on + strand, within Psest_2661 at 2848.515 kb on + strand, within Psest_2661 at 2848.515 kb on + strand, within Psest_2661 at 2848.515 kb on + strand, within Psest_2661 at 2848.515 kb on + strand, within Psest_2661 at 2848.515 kb on + strand, within Psest_2661 at 2848.516 kb on - strand, within Psest_2661 at 2848.516 kb on - strand, within Psest_2661 at 2848.516 kb on - strand, within Psest_2661 at 2848.516 kb on - strand, within Psest_2661 at 2848.516 kb on - strand, within Psest_2661 at 2848.516 kb on - strand, within Psest_2661 at 2848.516 kb on - strand, within Psest_2661 at 2848.516 kb on - strand, within Psest_2661 at 2848.516 kb on - strand, within Psest_2661 at 2848.516 kb on - strand, within Psest_2661 at 2848.784 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.808 kb on + strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661 at 2848.809 kb on - strand, within Psest_2661
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cephalothin 0.08 mg/ml remove 2,845,694 + Psest_2659 0.14 +0.6 2,845,695 - Psest_2659 0.14 -1.0 2,845,713 + Psest_2659 0.16 +1.0 2,845,713 + Psest_2659 0.16 -0.1 2,845,714 - Psest_2659 0.17 -0.3 2,845,714 - Psest_2659 0.17 -0.1 2,846,008 + Psest_2659 0.49 -0.7 2,846,008 + Psest_2659 0.49 -0.3 2,846,008 + Psest_2659 0.49 -0.5 2,846,008 + Psest_2659 0.49 +0.8 2,846,122 + Psest_2659 0.62 +0.5 2,846,122 + Psest_2659 0.62 -0.4 2,846,122 + Psest_2659 0.62 -1.0 2,846,123 - Psest_2659 0.62 +0.4 2,846,123 - Psest_2659 0.62 -0.8 2,846,161 + Psest_2659 0.66 -1.6 2,846,161 + Psest_2659 0.66 -0.4 2,846,161 + Psest_2659 0.66 -0.3 2,846,190 - Psest_2659 0.69 -2.0 2,846,478 - -0.5 2,847,090 + Psest_2660 0.37 +1.1 2,847,090 + Psest_2660 0.37 -1.3 2,847,090 + Psest_2660 0.37 +0.6 2,847,090 + Psest_2660 0.37 -2.6 2,847,091 - Psest_2660 0.37 -0.9 2,847,091 - Psest_2660 0.37 +0.7 2,847,178 + Psest_2660 0.45 +1.3 2,847,194 + Psest_2660 0.46 -0.0 2,847,298 + Psest_2660 0.55 +2.3 2,847,299 - Psest_2660 0.55 +0.3 2,847,317 + Psest_2660 0.56 +1.3 2,847,389 - Psest_2660 0.62 -0.0 2,847,389 - Psest_2660 0.62 +1.4 2,847,389 - Psest_2660 0.62 -0.1 2,847,389 - Psest_2660 0.62 +0.8 2,847,421 + Psest_2660 0.65 -1.1 2,847,421 + Psest_2660 0.65 +0.7 2,847,421 + Psest_2660 0.65 +0.9 2,847,421 + Psest_2660 0.65 +1.0 2,847,421 + Psest_2660 0.65 -0.2 2,847,421 + Psest_2660 0.65 +0.8 2,847,421 + Psest_2660 0.65 +0.3 2,847,422 - Psest_2660 0.65 -0.5 2,847,422 - Psest_2660 0.65 -0.8 2,847,422 - Psest_2660 0.65 +0.7 2,847,422 - Psest_2660 0.65 +0.9 2,847,422 - Psest_2660 0.65 -0.2 2,847,422 - Psest_2660 0.65 +2.1 2,847,422 - Psest_2660 0.65 -0.8 2,847,422 - Psest_2660 0.65 -0.0 2,847,422 - Psest_2660 0.65 +1.6 2,847,422 - Psest_2660 0.65 +0.0 2,847,422 - Psest_2660 0.65 -1.6 2,847,422 - Psest_2660 0.65 -0.3 2,847,608 - Psest_2660 0.80 -0.4 2,847,609 + Psest_2660 0.80 +0.8 2,847,640 + Psest_2660 0.83 +0.8 2,847,641 - Psest_2660 0.83 +0.3 2,847,779 + +0.2 2,847,923 + -0.9 2,847,930 + +0.1 2,847,930 + -1.4 2,847,931 - +1.7 2,847,931 - -0.3 2,847,931 - -0.0 2,847,931 - +0.2 2,847,931 - -0.2 2,847,931 - +0.3 2,847,942 + -1.4 2,847,942 + +0.1 2,847,942 + -0.4 2,847,943 - -1.4 2,848,059 + -0.1 2,848,059 + -0.6 2,848,059 + -0.3 2,848,059 + -0.3 2,848,059 + -1.0 2,848,059 + -0.2 2,848,059 + +0.4 2,848,059 + -1.0 2,848,059 + +0.0 2,848,059 + -0.4 2,848,059 + +0.7 2,848,060 - -0.0 2,848,060 - -0.8 2,848,060 - +0.6 2,848,060 - +0.7 2,848,060 - +0.9 2,848,060 - -1.1 2,848,060 - +1.9 2,848,060 - -0.8 2,848,060 - -0.8 2,848,060 - -0.4 2,848,060 - -1.2 2,848,060 - -0.9 2,848,060 - -1.7 2,848,060 - +1.0 2,848,060 - +0.4 2,848,266 + Psest_2661 0.24 +0.6 2,848,267 - Psest_2661 0.24 +0.2 2,848,420 + Psest_2661 0.40 -0.6 2,848,420 + Psest_2661 0.40 -0.0 2,848,420 + Psest_2661 0.40 -2.0 2,848,420 + Psest_2661 0.40 -0.3 2,848,420 + Psest_2661 0.40 -1.0 2,848,421 - Psest_2661 0.40 +1.0 2,848,515 + Psest_2661 0.50 +0.5 2,848,515 + Psest_2661 0.50 -0.7 2,848,515 + Psest_2661 0.50 -0.3 2,848,515 + Psest_2661 0.50 -0.9 2,848,515 + Psest_2661 0.50 -0.6 2,848,515 + Psest_2661 0.50 -0.4 2,848,515 + Psest_2661 0.50 +1.3 2,848,515 + Psest_2661 0.50 -0.3 2,848,516 - Psest_2661 0.50 +0.4 2,848,516 - Psest_2661 0.50 +1.0 2,848,516 - Psest_2661 0.50 +0.8 2,848,516 - Psest_2661 0.50 +0.8 2,848,516 - Psest_2661 0.50 -2.6 2,848,516 - Psest_2661 0.50 +0.1 2,848,516 - Psest_2661 0.50 -0.3 2,848,516 - Psest_2661 0.50 -0.8 2,848,516 - Psest_2661 0.50 +0.2 2,848,516 - Psest_2661 0.50 -0.9 2,848,784 + Psest_2661 0.79 -0.7 2,848,808 + Psest_2661 0.82 +1.0 2,848,808 + Psest_2661 0.82 +0.4 2,848,808 + Psest_2661 0.82 -0.0 2,848,808 + Psest_2661 0.82 +1.6 2,848,808 + Psest_2661 0.82 +0.2 2,848,808 + Psest_2661 0.82 -0.8 2,848,808 + Psest_2661 0.82 -0.8 2,848,808 + Psest_2661 0.82 +0.2 2,848,808 + Psest_2661 0.82 -1.1 2,848,808 + Psest_2661 0.82 -2.0 2,848,808 + Psest_2661 0.82 -1.8 2,848,808 + Psest_2661 0.82 +0.2 2,848,808 + Psest_2661 0.82 -1.4 2,848,809 - Psest_2661 0.82 +0.9 2,848,809 - Psest_2661 0.82 +0.7 2,848,809 - Psest_2661 0.82 -0.2 2,848,809 - Psest_2661 0.82 -0.4 2,848,809 - Psest_2661 0.82 -0.8 2,848,809 - Psest_2661 0.82 -0.1 2,848,809 - Psest_2661 0.82 +0.6 2,848,809 - Psest_2661 0.82 +0.4 2,848,809 - Psest_2661 0.82 -0.0 2,848,809 - Psest_2661 0.82 -0.1 2,848,809 - Psest_2661 0.82 +0.6 2,848,809 - Psest_2661 0.82 +0.6 2,848,809 - Psest_2661 0.82 -0.1 2,848,809 - Psest_2661 0.82 +0.6
Or see this region's nucleotide sequence