Experiment: Def Cephalothin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1935 and Psest_1936 are separated by 303 nucleotides Psest_1936 and Psest_1937 are separated by 14 nucleotides
Psest_1935: Psest_1935 - hypothetical protein, at 2,047,311 to 2,048,030
_1935
Psest_1936: Psest_1936 - Response regulator with putative antiterminator output domain, at 2,048,334 to 2,048,912
_1936
Psest_1937: Psest_1937 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 2,048,927 to 2,050,147
_1937
Position (kb)
2048
2049 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2047.588 kb on - strand, within Psest_1935 at 2047.679 kb on + strand, within Psest_1935 at 2047.679 kb on + strand, within Psest_1935 at 2047.680 kb on - strand, within Psest_1935 at 2047.680 kb on - strand, within Psest_1935 at 2047.680 kb on - strand, within Psest_1935 at 2047.680 kb on - strand, within Psest_1935 at 2047.683 kb on + strand, within Psest_1935 at 2047.683 kb on + strand, within Psest_1935 at 2047.683 kb on + strand, within Psest_1935 at 2047.683 kb on + strand, within Psest_1935 at 2047.683 kb on + strand, within Psest_1935 at 2047.683 kb on + strand, within Psest_1935 at 2047.683 kb on + strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.684 kb on - strand, within Psest_1935 at 2047.766 kb on - strand, within Psest_1935 at 2048.169 kb on + strand at 2048.169 kb on + strand at 2048.169 kb on + strand at 2048.170 kb on - strand at 2048.426 kb on + strand, within Psest_1936 at 2048.427 kb on - strand, within Psest_1936 at 2048.427 kb on - strand, within Psest_1936 at 2048.428 kb on + strand, within Psest_1936 at 2048.428 kb on + strand, within Psest_1936 at 2048.429 kb on - strand, within Psest_1936 at 2048.603 kb on + strand, within Psest_1936 at 2048.617 kb on + strand, within Psest_1936 at 2048.617 kb on + strand, within Psest_1936 at 2048.617 kb on + strand, within Psest_1936 at 2048.617 kb on + strand, within Psest_1936 at 2048.618 kb on - strand, within Psest_1936 at 2048.618 kb on - strand, within Psest_1936 at 2048.618 kb on - strand, within Psest_1936 at 2048.618 kb on - strand, within Psest_1936 at 2048.618 kb on - strand, within Psest_1936 at 2048.709 kb on + strand, within Psest_1936 at 2048.710 kb on - strand, within Psest_1936 at 2048.710 kb on - strand, within Psest_1936 at 2048.715 kb on + strand, within Psest_1936 at 2048.715 kb on + strand, within Psest_1936 at 2048.731 kb on - strand, within Psest_1936 at 2048.731 kb on - strand, within Psest_1936 at 2048.805 kb on + strand, within Psest_1936 at 2048.805 kb on + strand, within Psest_1936 at 2048.805 kb on + strand, within Psest_1936 at 2048.805 kb on + strand, within Psest_1936 at 2048.806 kb on - strand, within Psest_1936 at 2048.806 kb on - strand, within Psest_1936 at 2048.913 kb on - strand at 2048.986 kb on - strand at 2049.129 kb on + strand, within Psest_1937 at 2049.129 kb on + strand, within Psest_1937 at 2049.129 kb on + strand, within Psest_1937 at 2049.130 kb on - strand, within Psest_1937 at 2049.198 kb on + strand, within Psest_1937 at 2049.199 kb on - strand, within Psest_1937 at 2049.199 kb on - strand, within Psest_1937 at 2049.199 kb on - strand, within Psest_1937 at 2049.199 kb on - strand, within Psest_1937 at 2049.199 kb on - strand, within Psest_1937 at 2049.325 kb on - strand, within Psest_1937 at 2049.672 kb on + strand, within Psest_1937 at 2049.672 kb on + strand, within Psest_1937 at 2049.673 kb on - strand, within Psest_1937 at 2049.673 kb on - strand, within Psest_1937 at 2049.673 kb on - strand, within Psest_1937 at 2049.675 kb on + strand, within Psest_1937 at 2049.676 kb on - strand, within Psest_1937 at 2049.676 kb on - strand, within Psest_1937 at 2049.676 kb on - strand, within Psest_1937 at 2049.709 kb on + strand, within Psest_1937 at 2049.710 kb on - strand, within Psest_1937
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cephalothin 0.08 mg/ml remove 2,047,588 - Psest_1935 0.38 -0.3 2,047,679 + Psest_1935 0.51 +0.1 2,047,679 + Psest_1935 0.51 -1.5 2,047,680 - Psest_1935 0.51 +2.3 2,047,680 - Psest_1935 0.51 +0.1 2,047,680 - Psest_1935 0.51 -0.5 2,047,680 - Psest_1935 0.51 -0.4 2,047,683 + Psest_1935 0.52 +0.3 2,047,683 + Psest_1935 0.52 +1.9 2,047,683 + Psest_1935 0.52 -0.5 2,047,683 + Psest_1935 0.52 +1.1 2,047,683 + Psest_1935 0.52 +0.5 2,047,683 + Psest_1935 0.52 -0.5 2,047,683 + Psest_1935 0.52 +1.4 2,047,684 - Psest_1935 0.52 +0.3 2,047,684 - Psest_1935 0.52 +1.5 2,047,684 - Psest_1935 0.52 +1.9 2,047,684 - Psest_1935 0.52 -1.6 2,047,684 - Psest_1935 0.52 -0.5 2,047,684 - Psest_1935 0.52 +1.2 2,047,684 - Psest_1935 0.52 -1.8 2,047,684 - Psest_1935 0.52 -0.4 2,047,684 - Psest_1935 0.52 -0.5 2,047,684 - Psest_1935 0.52 +0.4 2,047,684 - Psest_1935 0.52 -1.5 2,047,684 - Psest_1935 0.52 +0.0 2,047,684 - Psest_1935 0.52 +0.4 2,047,684 - Psest_1935 0.52 -0.3 2,047,766 - Psest_1935 0.63 -0.5 2,048,169 + -0.5 2,048,169 + -1.9 2,048,169 + -0.2 2,048,170 - -0.5 2,048,426 + Psest_1936 0.16 -0.8 2,048,427 - Psest_1936 0.16 -0.6 2,048,427 - Psest_1936 0.16 -0.3 2,048,428 + Psest_1936 0.16 -0.2 2,048,428 + Psest_1936 0.16 +0.1 2,048,429 - Psest_1936 0.16 -0.4 2,048,603 + Psest_1936 0.46 +0.3 2,048,617 + Psest_1936 0.49 -0.3 2,048,617 + Psest_1936 0.49 +1.8 2,048,617 + Psest_1936 0.49 +1.5 2,048,617 + Psest_1936 0.49 +1.1 2,048,618 - Psest_1936 0.49 -0.6 2,048,618 - Psest_1936 0.49 -1.2 2,048,618 - Psest_1936 0.49 -2.1 2,048,618 - Psest_1936 0.49 -0.7 2,048,618 - Psest_1936 0.49 -0.5 2,048,709 + Psest_1936 0.65 +1.8 2,048,710 - Psest_1936 0.65 +0.1 2,048,710 - Psest_1936 0.65 +0.2 2,048,715 + Psest_1936 0.66 -0.4 2,048,715 + Psest_1936 0.66 +0.7 2,048,731 - Psest_1936 0.69 -1.6 2,048,731 - Psest_1936 0.69 +0.3 2,048,805 + Psest_1936 0.81 +2.2 2,048,805 + Psest_1936 0.81 +2.0 2,048,805 + Psest_1936 0.81 -1.3 2,048,805 + Psest_1936 0.81 +2.5 2,048,806 - Psest_1936 0.82 +0.1 2,048,806 - Psest_1936 0.82 -0.6 2,048,913 - -0.6 2,048,986 - -0.2 2,049,129 + Psest_1937 0.17 +0.5 2,049,129 + Psest_1937 0.17 -1.4 2,049,129 + Psest_1937 0.17 -0.4 2,049,130 - Psest_1937 0.17 -0.5 2,049,198 + Psest_1937 0.22 +0.3 2,049,199 - Psest_1937 0.22 -0.8 2,049,199 - Psest_1937 0.22 -0.0 2,049,199 - Psest_1937 0.22 +0.5 2,049,199 - Psest_1937 0.22 -0.5 2,049,199 - Psest_1937 0.22 +1.1 2,049,325 - Psest_1937 0.33 +0.4 2,049,672 + Psest_1937 0.61 +0.1 2,049,672 + Psest_1937 0.61 -0.1 2,049,673 - Psest_1937 0.61 -0.8 2,049,673 - Psest_1937 0.61 -1.5 2,049,673 - Psest_1937 0.61 +0.3 2,049,675 + Psest_1937 0.61 +0.7 2,049,676 - Psest_1937 0.61 +0.4 2,049,676 - Psest_1937 0.61 +0.7 2,049,676 - Psest_1937 0.61 -0.2 2,049,709 + Psest_1937 0.64 -0.5 2,049,710 - Psest_1937 0.64 -1.1
Or see this region's nucleotide sequence