Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4093

Experiment: Def Cephalothin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4091 and Psest_4092 are separated by 10 nucleotidesPsest_4092 and Psest_4093 are separated by 59 nucleotidesPsest_4093 and Psest_4094 are separated by 155 nucleotides Psest_4091: Psest_4091 - diaminobutyrate--2-oxoglutarate aminotransferase, at 4,267,459 to 4,268,736 _4091 Psest_4092: Psest_4092 - Ectoine synthase., at 4,268,747 to 4,269,148 _4092 Psest_4093: Psest_4093 - ectoine hydroxylase, at 4,269,208 to 4,270,125 _4093 Psest_4094: Psest_4094 - Aspartokinases, at 4,270,281 to 4,271,711 _4094 Position (kb) 4269 4270 4271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4268.494 kb on + strand, within Psest_4091at 4268.740 kb on - strandat 4268.740 kb on - strandat 4268.740 kb on - strandat 4268.879 kb on + strand, within Psest_4092at 4268.879 kb on + strand, within Psest_4092at 4268.879 kb on + strand, within Psest_4092at 4268.879 kb on + strand, within Psest_4092at 4268.879 kb on + strand, within Psest_4092at 4268.880 kb on - strand, within Psest_4092at 4268.880 kb on - strand, within Psest_4092at 4268.930 kb on + strand, within Psest_4092at 4268.931 kb on - strand, within Psest_4092at 4268.981 kb on + strand, within Psest_4092at 4268.982 kb on - strand, within Psest_4092at 4268.982 kb on - strand, within Psest_4092at 4268.982 kb on - strand, within Psest_4092at 4268.982 kb on - strand, within Psest_4092at 4268.982 kb on - strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.005 kb on + strand, within Psest_4092at 4269.006 kb on - strand, within Psest_4092at 4269.006 kb on - strand, within Psest_4092at 4269.006 kb on - strand, within Psest_4092at 4269.006 kb on - strand, within Psest_4092at 4269.006 kb on - strand, within Psest_4092at 4269.006 kb on - strand, within Psest_4092at 4269.006 kb on - strand, within Psest_4092at 4269.006 kb on - strand, within Psest_4092at 4269.006 kb on - strand, within Psest_4092at 4269.123 kb on - strandat 4269.203 kb on + strandat 4269.203 kb on + strandat 4269.203 kb on + strandat 4269.203 kb on + strandat 4269.203 kb on + strandat 4269.203 kb on + strandat 4269.216 kb on + strandat 4269.217 kb on - strandat 4269.217 kb on - strandat 4269.589 kb on + strand, within Psest_4093at 4269.589 kb on + strand, within Psest_4093at 4269.590 kb on - strand, within Psest_4093at 4269.644 kb on - strand, within Psest_4093at 4269.781 kb on + strand, within Psest_4093at 4269.781 kb on + strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.817 kb on + strand, within Psest_4093at 4270.000 kb on + strand, within Psest_4093at 4270.000 kb on + strand, within Psest_4093at 4270.000 kb on + strand, within Psest_4093at 4270.001 kb on - strand, within Psest_4093at 4270.001 kb on - strand, within Psest_4093at 4270.001 kb on - strand, within Psest_4093at 4270.001 kb on - strand, within Psest_4093at 4270.001 kb on - strand, within Psest_4093at 4270.006 kb on + strand, within Psest_4093at 4270.006 kb on + strand, within Psest_4093at 4270.006 kb on + strand, within Psest_4093at 4270.007 kb on - strand, within Psest_4093at 4270.007 kb on - strand, within Psest_4093at 4270.020 kb on + strand, within Psest_4093at 4270.117 kb on + strandat 4270.117 kb on + strandat 4270.117 kb on + strandat 4270.117 kb on + strandat 4270.117 kb on + strandat 4270.118 kb on - strandat 4270.118 kb on - strandat 4270.118 kb on - strandat 4270.118 kb on - strandat 4270.118 kb on - strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.275 kb on - strandat 4270.275 kb on - strandat 4270.275 kb on - strandat 4270.275 kb on - strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.277 kb on - strandat 4270.277 kb on - strandat 4270.277 kb on - strandat 4270.277 kb on - strandat 4270.277 kb on - strandat 4270.277 kb on - strandat 4270.286 kb on + strandat 4270.286 kb on + strandat 4270.287 kb on - strandat 4270.291 kb on + strandat 4270.291 kb on + strandat 4270.343 kb on + strandat 4270.344 kb on - strandat 4270.378 kb on - strandat 4270.378 kb on - strandat 4270.378 kb on - strandat 4270.404 kb on + strandat 4270.404 kb on + strandat 4270.404 kb on + strandat 4270.405 kb on - strandat 4270.461 kb on + strand, within Psest_4094at 4270.462 kb on - strand, within Psest_4094at 4270.889 kb on + strand, within Psest_4094at 4270.889 kb on + strand, within Psest_4094at 4270.889 kb on + strand, within Psest_4094at 4270.889 kb on + strand, within Psest_4094at 4270.890 kb on - strand, within Psest_4094at 4270.890 kb on - strand, within Psest_4094at 4270.920 kb on + strand, within Psest_4094at 4270.920 kb on + strand, within Psest_4094at 4270.920 kb on + strand, within Psest_4094at 4270.920 kb on + strand, within Psest_4094at 4270.920 kb on + strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4271.070 kb on + strand, within Psest_4094at 4271.070 kb on + strand, within Psest_4094at 4271.070 kb on + strand, within Psest_4094at 4271.070 kb on + strand, within Psest_4094at 4271.071 kb on - strand, within Psest_4094at 4271.071 kb on - strand, within Psest_4094at 4271.071 kb on - strand, within Psest_4094at 4271.071 kb on - strand, within Psest_4094

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Cephalothin 0.04 mg/ml
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4,268,494 + Psest_4091 0.81 -0.9
4,268,740 - -0.7
4,268,740 - +1.4
4,268,740 - -0.2
4,268,879 + Psest_4092 0.33 +1.3
4,268,879 + Psest_4092 0.33 +0.6
4,268,879 + Psest_4092 0.33 -0.8
4,268,879 + Psest_4092 0.33 -0.1
4,268,879 + Psest_4092 0.33 -0.9
4,268,880 - Psest_4092 0.33 -1.2
4,268,880 - Psest_4092 0.33 +0.3
4,268,930 + Psest_4092 0.46 -0.8
4,268,931 - Psest_4092 0.46 -0.4
4,268,981 + Psest_4092 0.58 -1.9
4,268,982 - Psest_4092 0.58 +0.1
4,268,982 - Psest_4092 0.58 -1.3
4,268,982 - Psest_4092 0.58 -0.4
4,268,982 - Psest_4092 0.58 +1.4
4,268,982 - Psest_4092 0.58 -1.1
4,269,005 + Psest_4092 0.64 +1.5
4,269,005 + Psest_4092 0.64 +0.4
4,269,005 + Psest_4092 0.64 -1.0
4,269,005 + Psest_4092 0.64 -1.5
4,269,005 + Psest_4092 0.64 +1.5
4,269,005 + Psest_4092 0.64 +0.1
4,269,005 + Psest_4092 0.64 +2.3
4,269,005 + Psest_4092 0.64 -0.5
4,269,005 + Psest_4092 0.64 -1.1
4,269,005 + Psest_4092 0.64 +0.1
4,269,005 + Psest_4092 0.64 -0.0
4,269,005 + Psest_4092 0.64 +0.4
4,269,005 + Psest_4092 0.64 -0.2
4,269,005 + Psest_4092 0.64 -3.3
4,269,005 + Psest_4092 0.64 +1.3
4,269,006 - Psest_4092 0.64 -0.6
4,269,006 - Psest_4092 0.64 +0.2
4,269,006 - Psest_4092 0.64 -0.1
4,269,006 - Psest_4092 0.64 +0.5
4,269,006 - Psest_4092 0.64 +0.7
4,269,006 - Psest_4092 0.64 +0.7
4,269,006 - Psest_4092 0.64 -0.7
4,269,006 - Psest_4092 0.64 +0.5
4,269,006 - Psest_4092 0.64 -1.1
4,269,123 - +1.2
4,269,203 + -0.1
4,269,203 + -0.2
4,269,203 + +0.9
4,269,203 + -0.1
4,269,203 + -1.6
4,269,203 + +0.4
4,269,216 + -1.0
4,269,217 - -0.2
4,269,217 - -0.3
4,269,589 + Psest_4093 0.42 -0.5
4,269,589 + Psest_4093 0.42 -0.2
4,269,590 - Psest_4093 0.42 -1.1
4,269,644 - Psest_4093 0.47 -0.8
4,269,781 + Psest_4093 0.62 -0.9
4,269,781 + Psest_4093 0.62 -0.2
4,269,782 - Psest_4093 0.63 +2.7
4,269,782 - Psest_4093 0.63 -1.8
4,269,782 - Psest_4093 0.63 -0.1
4,269,782 - Psest_4093 0.63 +0.1
4,269,782 - Psest_4093 0.63 -2.4
4,269,782 - Psest_4093 0.63 +0.2
4,269,817 + Psest_4093 0.66 +0.6
4,270,000 + Psest_4093 0.86 +0.1
4,270,000 + Psest_4093 0.86 -0.1
4,270,000 + Psest_4093 0.86 +0.2
4,270,001 - Psest_4093 0.86 -0.5
4,270,001 - Psest_4093 0.86 -2.1
4,270,001 - Psest_4093 0.86 -1.8
4,270,001 - Psest_4093 0.86 -0.1
4,270,001 - Psest_4093 0.86 -0.1
4,270,006 + Psest_4093 0.87 +0.4
4,270,006 + Psest_4093 0.87 -0.1
4,270,006 + Psest_4093 0.87 -0.3
4,270,007 - Psest_4093 0.87 -0.7
4,270,007 - Psest_4093 0.87 -0.4
4,270,020 + Psest_4093 0.88 -0.6
4,270,117 + +0.1
4,270,117 + -0.6
4,270,117 + +0.0
4,270,117 + -1.3
4,270,117 + -2.1
4,270,118 - -0.5
4,270,118 - +0.2
4,270,118 - -1.5
4,270,118 - +1.5
4,270,118 - -1.5
4,270,274 + -0.3
4,270,274 + +0.4
4,270,274 + +0.1
4,270,274 + -2.6
4,270,274 + -0.3
4,270,274 + +0.1
4,270,274 + +2.6
4,270,275 - -1.5
4,270,275 - -0.2
4,270,275 - -0.8
4,270,275 - -0.5
4,270,276 + +0.4
4,270,276 + +0.4
4,270,276 + +0.6
4,270,276 + -0.6
4,270,276 + +0.0
4,270,276 + +0.2
4,270,276 + -2.1
4,270,277 - -2.8
4,270,277 - +1.2
4,270,277 - -0.3
4,270,277 - -0.5
4,270,277 - +0.7
4,270,277 - -0.9
4,270,286 + -0.1
4,270,286 + -0.4
4,270,287 - -1.5
4,270,291 + -1.6
4,270,291 + +1.2
4,270,343 + -0.6
4,270,344 - +0.3
4,270,378 - -1.1
4,270,378 - +0.3
4,270,378 - -0.5
4,270,404 + +0.8
4,270,404 + -0.1
4,270,404 + -1.5
4,270,405 - -0.6
4,270,461 + Psest_4094 0.13 -0.5
4,270,462 - Psest_4094 0.13 -0.3
4,270,889 + Psest_4094 0.42 -1.5
4,270,889 + Psest_4094 0.42 -1.1
4,270,889 + Psest_4094 0.42 -0.1
4,270,889 + Psest_4094 0.42 +0.2
4,270,890 - Psest_4094 0.43 -0.1
4,270,890 - Psest_4094 0.43 -0.6
4,270,920 + Psest_4094 0.45 -0.2
4,270,920 + Psest_4094 0.45 -1.9
4,270,920 + Psest_4094 0.45 -0.1
4,270,920 + Psest_4094 0.45 -1.3
4,270,920 + Psest_4094 0.45 -0.3
4,270,921 - Psest_4094 0.45 -2.2
4,270,921 - Psest_4094 0.45 +0.2
4,270,921 - Psest_4094 0.45 -1.3
4,270,921 - Psest_4094 0.45 -0.7
4,270,921 - Psest_4094 0.45 +1.2
4,270,921 - Psest_4094 0.45 -0.3
4,270,921 - Psest_4094 0.45 +0.7
4,271,070 + Psest_4094 0.55 -1.1
4,271,070 + Psest_4094 0.55 -1.4
4,271,070 + Psest_4094 0.55 +0.5
4,271,070 + Psest_4094 0.55 +0.8
4,271,071 - Psest_4094 0.55 -1.1
4,271,071 - Psest_4094 0.55 +0.2
4,271,071 - Psest_4094 0.55 -1.9
4,271,071 - Psest_4094 0.55 +2.1

Or see this region's nucleotide sequence