Experiment: Def Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0036 and Psest_0037 are separated by 183 nucleotides Psest_0037 and Psest_0038 are separated by 79 nucleotides Psest_0038 and Psest_0039 are separated by 16 nucleotides
Psest_0036: Psest_0036 - Predicted membrane protein, at 36,918 to 38,621
_0036
Psest_0037: Psest_0037 - trehalose synthase, Pseudomonas stutzeri type, at 38,805 to 40,874
_0037
Psest_0038: Psest_0038 - hypothetical protein, at 40,954 to 41,574
_0038
Psest_0039: Psest_0039 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 41,591 to 43,255
_0039
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 38.038 kb on + strand, within Psest_0036 at 38.203 kb on + strand, within Psest_0036 at 38.256 kb on + strand, within Psest_0036 at 38.257 kb on - strand, within Psest_0036 at 38.257 kb on - strand, within Psest_0036 at 38.429 kb on - strand, within Psest_0036 at 38.771 kb on - strand at 38.771 kb on - strand at 38.771 kb on - strand at 38.822 kb on + strand at 38.822 kb on + strand at 38.822 kb on + strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.919 kb on + strand at 39.307 kb on - strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.555 kb on + strand, within Psest_0037 at 39.555 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.876 kb on + strand, within Psest_0037 at 40.057 kb on - strand, within Psest_0037 at 40.071 kb on + strand, within Psest_0037 at 40.071 kb on + strand, within Psest_0037 at 40.071 kb on + strand, within Psest_0037 at 40.071 kb on + strand, within Psest_0037 at 40.071 kb on + strand, within Psest_0037 at 40.072 kb on - strand, within Psest_0037 at 40.072 kb on - strand, within Psest_0037 at 40.072 kb on - strand, within Psest_0037 at 40.072 kb on - strand, within Psest_0037 at 40.129 kb on - strand, within Psest_0037 at 40.129 kb on - strand, within Psest_0037 at 40.129 kb on - strand, within Psest_0037 at 40.159 kb on - strand, within Psest_0037 at 40.159 kb on - strand, within Psest_0037 at 40.159 kb on - strand, within Psest_0037 at 40.283 kb on + strand, within Psest_0037 at 40.283 kb on + strand, within Psest_0037 at 40.284 kb on - strand, within Psest_0037 at 40.284 kb on - strand, within Psest_0037 at 40.284 kb on - strand, within Psest_0037 at 40.284 kb on - strand, within Psest_0037 at 40.284 kb on - strand, within Psest_0037 at 40.562 kb on + strand, within Psest_0037 at 40.578 kb on + strand, within Psest_0037 at 40.579 kb on - strand, within Psest_0037 at 40.579 kb on - strand, within Psest_0037 at 40.579 kb on - strand, within Psest_0037 at 40.906 kb on + strand at 40.908 kb on + strand at 40.908 kb on + strand at 40.909 kb on - strand at 40.909 kb on - strand at 40.983 kb on + strand at 40.984 kb on - strand at 40.984 kb on - strand at 41.122 kb on + strand, within Psest_0038 at 41.122 kb on + strand, within Psest_0038 at 41.123 kb on - strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.476 kb on + strand, within Psest_0038 at 41.477 kb on - strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.676 kb on + strand at 41.685 kb on + strand at 41.685 kb on + strand at 41.685 kb on + strand at 41.686 kb on - strand at 41.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cephalothin 0.04 mg/ml remove 37,855 + Psest_0036 0.55 +0.3 37,855 + Psest_0036 0.55 +0.4 37,855 + Psest_0036 0.55 +1.2 38,038 + Psest_0036 0.66 -0.7 38,203 + Psest_0036 0.75 -0.4 38,256 + Psest_0036 0.79 -1.2 38,257 - Psest_0036 0.79 -1.4 38,257 - Psest_0036 0.79 -1.6 38,429 - Psest_0036 0.89 +1.0 38,771 - -1.0 38,771 - +0.6 38,771 - -0.1 38,822 + -0.4 38,822 + +3.2 38,822 + -0.4 38,823 - +0.0 38,823 - +1.0 38,823 - -0.2 38,823 - +1.6 38,823 - -0.4 38,823 - -1.4 38,823 - -0.7 38,823 - +0.0 38,823 - +0.6 38,823 - -0.4 38,823 - -0.7 38,823 - -0.4 38,823 - +0.2 38,826 + +0.4 38,826 + +1.1 38,826 + +1.1 38,826 + -1.2 38,826 + +1.0 38,826 + +0.0 38,826 + +0.4 38,826 + -0.6 38,826 + -0.7 38,826 + +0.6 38,826 + +0.0 38,826 + +1.2 38,826 + +1.0 38,826 + -1.2 38,826 + -1.0 38,826 + -2.4 38,826 + +1.7 38,827 - +0.9 38,827 - +1.6 38,827 - +0.0 38,827 - +0.6 38,827 - +1.0 38,827 - +1.3 38,827 - +0.6 38,827 - -0.4 38,827 - +0.0 38,827 - -0.7 38,827 - +0.8 38,827 - +0.6 38,827 - +0.9 38,827 - +0.5 38,827 - +1.3 38,827 - +1.6 38,827 - +1.3 38,827 - -1.4 38,827 - -0.5 38,827 - +0.0 38,827 - +1.4 38,827 - +0.1 38,827 - -0.7 38,827 - -0.4 38,827 - +0.5 38,827 - +0.0 38,827 - -1.0 38,827 - -0.4 38,827 - +1.3 38,827 - +1.6 38,827 - +0.8 38,827 - +1.3 38,827 - +0.3 38,827 - -0.3 38,827 - +2.3 38,827 - +2.6 38,827 - +1.8 38,827 - +0.6 38,827 - +1.7 38,827 - -0.3 38,827 - +0.6 38,919 + +0.9 39,307 - Psest_0037 0.24 +0.0 39,441 + Psest_0037 0.31 +0.5 39,441 + Psest_0037 0.31 -1.7 39,441 + Psest_0037 0.31 +1.6 39,441 + Psest_0037 0.31 -0.7 39,441 + Psest_0037 0.31 +0.6 39,441 + Psest_0037 0.31 +0.3 39,441 + Psest_0037 0.31 +1.8 39,441 + Psest_0037 0.31 +0.6 39,441 + Psest_0037 0.31 +0.9 39,441 + Psest_0037 0.31 +0.4 39,441 + Psest_0037 0.31 -0.6 39,441 + Psest_0037 0.31 +0.6 39,442 - Psest_0037 0.31 +0.6 39,442 - Psest_0037 0.31 -0.3 39,442 - Psest_0037 0.31 -0.2 39,442 - Psest_0037 0.31 +0.4 39,442 - Psest_0037 0.31 +0.5 39,442 - Psest_0037 0.31 +2.1 39,555 + Psest_0037 0.36 +0.0 39,555 + Psest_0037 0.36 +0.1 39,564 + Psest_0037 0.37 +1.3 39,564 + Psest_0037 0.37 +0.9 39,564 + Psest_0037 0.37 +0.0 39,565 - Psest_0037 0.37 -1.6 39,565 - Psest_0037 0.37 +0.5 39,565 - Psest_0037 0.37 +0.5 39,565 - Psest_0037 0.37 +2.0 39,565 - Psest_0037 0.37 -2.4 39,565 - Psest_0037 0.37 +2.5 39,565 - Psest_0037 0.37 -0.1 39,876 + Psest_0037 0.52 +1.1 40,057 - Psest_0037 0.60 +0.7 40,071 + Psest_0037 0.61 +0.6 40,071 + Psest_0037 0.61 -1.3 40,071 + Psest_0037 0.61 +0.3 40,071 + Psest_0037 0.61 +0.4 40,071 + Psest_0037 0.61 -0.7 40,072 - Psest_0037 0.61 +0.3 40,072 - Psest_0037 0.61 +1.1 40,072 - Psest_0037 0.61 +1.1 40,072 - Psest_0037 0.61 +1.0 40,129 - Psest_0037 0.64 +0.3 40,129 - Psest_0037 0.64 +2.4 40,129 - Psest_0037 0.64 -1.9 40,159 - Psest_0037 0.65 -1.4 40,159 - Psest_0037 0.65 +1.9 40,159 - Psest_0037 0.65 -1.1 40,283 + Psest_0037 0.71 -1.9 40,283 + Psest_0037 0.71 +0.6 40,284 - Psest_0037 0.71 +0.0 40,284 - Psest_0037 0.71 +1.6 40,284 - Psest_0037 0.71 +1.0 40,284 - Psest_0037 0.71 +1.6 40,284 - Psest_0037 0.71 +0.1 40,562 + Psest_0037 0.85 +1.4 40,578 + Psest_0037 0.86 -0.2 40,579 - Psest_0037 0.86 +0.6 40,579 - Psest_0037 0.86 +1.0 40,579 - Psest_0037 0.86 +2.0 40,906 + -0.7 40,908 + -0.3 40,908 + +1.1 40,909 - -0.1 40,909 - -0.4 40,983 + +1.9 40,984 - -1.0 40,984 - -0.4 41,122 + Psest_0038 0.27 +0.0 41,122 + Psest_0038 0.27 +1.3 41,123 - Psest_0038 0.27 +1.2 41,440 + Psest_0038 0.78 -0.3 41,440 + Psest_0038 0.78 +0.6 41,440 + Psest_0038 0.78 +0.4 41,440 + Psest_0038 0.78 -0.7 41,441 - Psest_0038 0.78 +1.3 41,441 - Psest_0038 0.78 -1.2 41,441 - Psest_0038 0.78 -0.2 41,441 - Psest_0038 0.78 +0.3 41,476 + Psest_0038 0.84 +0.6 41,477 - Psest_0038 0.84 +1.6 41,478 + Psest_0038 0.84 +2.0 41,478 + Psest_0038 0.84 -1.7 41,478 + Psest_0038 0.84 +2.9 41,478 + Psest_0038 0.84 +0.6 41,479 - Psest_0038 0.85 -1.0 41,479 - Psest_0038 0.85 +1.6 41,479 - Psest_0038 0.85 +1.1 41,479 - Psest_0038 0.85 -2.0 41,479 - Psest_0038 0.85 -1.0 41,479 - Psest_0038 0.85 -0.9 41,479 - Psest_0038 0.85 +0.9 41,676 + +1.0 41,685 + +1.2 41,685 + +0.5 41,685 + +0.6 41,686 - -0.4 41,686 - +0.0
Or see this region's nucleotide sequence