Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0368

Experiment: Def Cephalothin 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0367 and Psest_0368 are separated by 399 nucleotidesPsest_0368 and Psest_0369 are separated by 102 nucleotides Psest_0367: Psest_0367 - Predicted branched-chain amino acid permease (azaleucine resistance), at 392,835 to 393,551 _0367 Psest_0368: Psest_0368 - Transcriptional regulator, at 393,951 to 394,865 _0368 Psest_0369: Psest_0369 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 394,968 to 396,110 _0369 Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2 3at 393.256 kb on + strand, within Psest_0367at 393.256 kb on + strand, within Psest_0367at 393.620 kb on + strandat 393.620 kb on + strandat 393.620 kb on + strandat 393.621 kb on - strandat 393.621 kb on - strandat 393.718 kb on + strandat 393.718 kb on + strandat 393.718 kb on + strandat 393.718 kb on + strandat 393.718 kb on + strandat 393.737 kb on - strandat 393.737 kb on - strandat 393.740 kb on + strandat 393.740 kb on + strandat 393.740 kb on + strandat 393.740 kb on + strandat 393.741 kb on - strandat 393.741 kb on - strandat 393.741 kb on - strandat 393.741 kb on - strandat 393.749 kb on + strandat 393.750 kb on - strandat 393.750 kb on - strandat 393.750 kb on - strandat 393.750 kb on - strandat 393.952 kb on + strandat 394.102 kb on - strand, within Psest_0368at 394.283 kb on - strand, within Psest_0368at 394.749 kb on + strand, within Psest_0368at 394.836 kb on - strandat 394.980 kb on + strandat 394.980 kb on + strandat 394.980 kb on + strandat 394.980 kb on + strandat 395.059 kb on + strandat 395.059 kb on + strandat 395.060 kb on - strandat 395.132 kb on + strand, within Psest_0369at 395.133 kb on - strand, within Psest_0369at 395.151 kb on + strand, within Psest_0369at 395.151 kb on + strand, within Psest_0369at 395.181 kb on + strand, within Psest_0369at 395.182 kb on - strand, within Psest_0369at 395.182 kb on - strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.406 kb on + strand, within Psest_0369at 395.407 kb on - strand, within Psest_0369at 395.407 kb on - strand, within Psest_0369at 395.407 kb on - strand, within Psest_0369at 395.407 kb on - strand, within Psest_0369at 395.407 kb on - strand, within Psest_0369

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Cephalothin 0.04 mg/ml
remove
393,256 + Psest_0367 0.59 -0.3
393,256 + Psest_0367 0.59 -1.3
393,620 + +2.7
393,620 + +0.7
393,620 + +1.7
393,621 - +1.1
393,621 - -0.3
393,718 + +0.7
393,718 + +1.7
393,718 + +0.1
393,718 + +1.1
393,718 + +1.7
393,737 - +1.7
393,737 - +0.5
393,740 + +1.7
393,740 + +0.1
393,740 + +0.1
393,740 + +0.4
393,741 - +1.0
393,741 - -0.0
393,741 - +1.5
393,741 - -0.3
393,749 + +1.7
393,750 - +2.1
393,750 - +0.1
393,750 - +0.7
393,750 - -0.1
393,952 + +1.9
394,102 - Psest_0368 0.17 -0.3
394,283 - Psest_0368 0.36 -0.2
394,749 + Psest_0368 0.87 -2.7
394,836 - +1.7
394,980 + +0.5
394,980 + +0.3
394,980 + +0.7
394,980 + -0.2
395,059 + +1.2
395,059 + -0.6
395,060 - +0.7
395,132 + Psest_0369 0.14 +1.7
395,133 - Psest_0369 0.14 +1.7
395,151 + Psest_0369 0.16 -1.3
395,151 + Psest_0369 0.16 -0.9
395,181 + Psest_0369 0.19 +0.1
395,182 - Psest_0369 0.19 +1.6
395,182 - Psest_0369 0.19 -0.3
395,406 + Psest_0369 0.38 +1.2
395,406 + Psest_0369 0.38 -1.3
395,406 + Psest_0369 0.38 +0.2
395,406 + Psest_0369 0.38 +0.0
395,406 + Psest_0369 0.38 +0.5
395,406 + Psest_0369 0.38 +0.7
395,407 - Psest_0369 0.38 -2.0
395,407 - Psest_0369 0.38 +1.7
395,407 - Psest_0369 0.38 +3.7
395,407 - Psest_0369 0.38 +2.0
395,407 - Psest_0369 0.38 +0.7

Or see this region's nucleotide sequence