Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3679

Experiment: Def Cephalothin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3677 and Psest_3678 are separated by 75 nucleotidesPsest_3678 and Psest_3679 are separated by 14 nucleotidesPsest_3679 and Psest_3680 are separated by 196 nucleotidesPsest_3680 and Psest_3681 are separated by 138 nucleotides Psest_3677: Psest_3677 - dihydroneopterin aldolase, at 3,841,887 to 3,842,240 _3677 Psest_3678: Psest_3678 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 3,842,316 to 3,842,885 _3678 Psest_3679: Psest_3679 - putative glycoprotease GCP, at 3,842,900 to 3,843,925 _3679 Psest_3680: Psest_3680 - ribosomal protein S21, at 3,844,122 to 3,844,337 _3680 Psest_3681: Psest_3681 - DNA primase, catalytic core, at 3,844,476 to 3,846,419 _3681 Position (kb) 3842 3843 3844Strain fitness (log2 ratio) -1 0 1 2 3at 3842.441 kb on + strand, within Psest_3678at 3842.441 kb on + strand, within Psest_3678at 3842.441 kb on + strand, within Psest_3678at 3842.441 kb on + strand, within Psest_3678at 3842.441 kb on + strand, within Psest_3678at 3842.441 kb on + strand, within Psest_3678at 3842.516 kb on - strand, within Psest_3678at 3842.601 kb on + strand, within Psest_3678at 3842.602 kb on - strand, within Psest_3678at 3842.822 kb on + strand, within Psest_3678at 3842.822 kb on + strand, within Psest_3678at 3842.823 kb on - strand, within Psest_3678at 3842.823 kb on - strand, within Psest_3678at 3842.823 kb on - strand, within Psest_3678at 3844.396 kb on + strandat 3844.461 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Cephalothin 0.04 mg/ml
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3,842,441 + Psest_3678 0.22 +0.8
3,842,441 + Psest_3678 0.22 +1.4
3,842,441 + Psest_3678 0.22 +2.9
3,842,441 + Psest_3678 0.22 +0.7
3,842,441 + Psest_3678 0.22 +0.4
3,842,441 + Psest_3678 0.22 +0.7
3,842,516 - Psest_3678 0.35 +1.2
3,842,601 + Psest_3678 0.50 +0.2
3,842,602 - Psest_3678 0.50 +1.0
3,842,822 + Psest_3678 0.89 -1.7
3,842,822 + Psest_3678 0.89 +1.0
3,842,823 - Psest_3678 0.89 +1.6
3,842,823 - Psest_3678 0.89 -0.0
3,842,823 - Psest_3678 0.89 -0.2
3,844,396 + +0.4
3,844,461 + -0.5

Or see this region's nucleotide sequence