Experiment: Def Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3636 and Psest_3637 are separated by 2 nucleotides Psest_3637 and Psest_3638 are separated by 46 nucleotides Psest_3638 and Psest_3639 are separated by 103 nucleotides
Psest_3636: Psest_3636 - Membrane proteins related to metalloendopeptidases, at 3,797,765 to 3,799,174
_3636
Psest_3637: Psest_3637 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 3,799,177 to 3,800,268
_3637
Psest_3638: Psest_3638 - Iron-sulfur cluster assembly accessory protein, at 3,800,315 to 3,800,665
_3638
Psest_3639: Psest_3639 - N-acetyl-gamma-glutamyl-phosphate reductase, common form, at 3,800,769 to 3,801,803
_3639
Position (kb)
3799
3800
3801 Strain fitness (log2 ratio)
-2
-1
0
1 at 3799.186 kb on + strand at 3799.248 kb on + strand at 3799.378 kb on - strand, within Psest_3637 at 3799.406 kb on + strand, within Psest_3637 at 3799.833 kb on - strand, within Psest_3637 at 3799.943 kb on + strand, within Psest_3637 at 3799.943 kb on + strand, within Psest_3637 at 3799.944 kb on - strand, within Psest_3637 at 3799.944 kb on - strand, within Psest_3637 at 3799.944 kb on - strand, within Psest_3637 at 3799.944 kb on - strand, within Psest_3637 at 3799.944 kb on - strand, within Psest_3637 at 3800.042 kb on + strand, within Psest_3637 at 3800.043 kb on - strand, within Psest_3637 at 3800.043 kb on - strand, within Psest_3637 at 3800.062 kb on - strand, within Psest_3637 at 3800.112 kb on - strand, within Psest_3637 at 3800.151 kb on - strand, within Psest_3637 at 3800.257 kb on + strand at 3800.266 kb on + strand at 3800.739 kb on + strand at 3800.750 kb on + strand at 3800.757 kb on + strand at 3800.757 kb on + strand at 3800.758 kb on - strand at 3800.758 kb on - strand at 3800.758 kb on - strand at 3800.758 kb on - strand at 3800.758 kb on - strand at 3800.758 kb on - strand at 3800.758 kb on - strand at 3800.758 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cephalothin 0.04 mg/ml remove 3,799,186 + -0.7 3,799,248 + -0.7 3,799,378 - Psest_3637 0.18 -0.4 3,799,406 + Psest_3637 0.21 +0.6 3,799,833 - Psest_3637 0.60 +0.6 3,799,943 + Psest_3637 0.70 -0.7 3,799,943 + Psest_3637 0.70 +0.6 3,799,944 - Psest_3637 0.70 +0.6 3,799,944 - Psest_3637 0.70 -2.0 3,799,944 - Psest_3637 0.70 -1.0 3,799,944 - Psest_3637 0.70 -0.4 3,799,944 - Psest_3637 0.70 +0.6 3,800,042 + Psest_3637 0.79 +0.6 3,800,043 - Psest_3637 0.79 +1.0 3,800,043 - Psest_3637 0.79 +0.6 3,800,062 - Psest_3637 0.81 +1.6 3,800,112 - Psest_3637 0.86 +0.6 3,800,151 - Psest_3637 0.89 +1.6 3,800,257 + +1.6 3,800,266 + -0.8 3,800,739 + -0.2 3,800,750 + +0.8 3,800,757 + +0.2 3,800,757 + -0.4 3,800,758 - -0.2 3,800,758 - -0.8 3,800,758 - -1.3 3,800,758 - -1.2 3,800,758 - -0.1 3,800,758 - -2.5 3,800,758 - -0.6 3,800,758 - -1.4
Or see this region's nucleotide sequence