Experiment: Def Cephalothin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1058 and Psest_1059 are separated by 565 nucleotides Psest_1059 and Psest_1060 are separated by 180 nucleotides Psest_1060 and Psest_1061 are separated by 16 nucleotides
Psest_1058: Psest_1058 - ribosomal-protein-alanine acetyltransferase, at 1,147,645 to 1,148,097
_1058
Psest_1059: Psest_1059 - hypothetical protein, at 1,148,663 to 1,149,205
_1059
Psest_1060: Psest_1060 - trehalose-phosphatase, at 1,149,386 to 1,150,162
_1060
Psest_1061: Psest_1061 - alpha,alpha-trehalose-phosphate synthase [UDP-forming], at 1,150,179 to 1,151,594
_1061
Position (kb)
1148
1149
1150 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1147.712 kb on - strand, within Psest_1058 at 1147.768 kb on + strand, within Psest_1058 at 1147.961 kb on + strand, within Psest_1058 at 1148.036 kb on - strand, within Psest_1058 at 1148.038 kb on + strand, within Psest_1058 at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.083 kb on - strand at 1148.083 kb on - strand at 1148.083 kb on - strand at 1148.083 kb on - strand at 1148.230 kb on + strand at 1148.230 kb on + strand at 1148.409 kb on - strand at 1148.561 kb on + strand at 1148.561 kb on + strand at 1148.562 kb on - strand at 1148.562 kb on - strand at 1148.562 kb on - strand at 1148.580 kb on + strand at 1148.580 kb on + strand at 1148.580 kb on + strand at 1148.580 kb on + strand at 1148.581 kb on - strand at 1148.581 kb on - strand at 1148.581 kb on - strand at 1148.581 kb on - strand at 1148.587 kb on - strand at 1148.610 kb on + strand at 1148.610 kb on + strand at 1148.611 kb on - strand at 1148.611 kb on - strand at 1148.611 kb on - strand at 1148.612 kb on + strand at 1148.612 kb on + strand at 1148.612 kb on + strand at 1148.612 kb on + strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.664 kb on + strand at 1148.664 kb on + strand at 1148.665 kb on - strand at 1149.378 kb on + strand at 1149.379 kb on - strand at 1149.379 kb on - strand at 1150.161 kb on - strand at 1150.172 kb on + strand at 1150.172 kb on + strand at 1150.173 kb on - strand at 1150.189 kb on + strand at 1150.190 kb on - strand at 1150.190 kb on - strand at 1150.190 kb on - strand at 1150.192 kb on + strand at 1150.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Cephalothin 0.04 mg/ml remove 1,147,712 - Psest_1058 0.15 +2.0 1,147,768 + Psest_1058 0.27 +0.1 1,147,961 + Psest_1058 0.70 +0.7 1,148,036 - Psest_1058 0.86 +2.1 1,148,038 + Psest_1058 0.87 +0.4 1,148,082 + +1.1 1,148,082 + -0.6 1,148,082 + -1.5 1,148,082 + -0.9 1,148,082 + +0.5 1,148,083 - +0.7 1,148,083 - -0.6 1,148,083 - +0.1 1,148,083 - -2.0 1,148,230 + +0.7 1,148,230 + +0.4 1,148,409 - -0.9 1,148,561 + +1.7 1,148,561 + +0.8 1,148,562 - +0.7 1,148,562 - +0.7 1,148,562 - +0.7 1,148,580 + +0.1 1,148,580 + +0.2 1,148,580 + +1.1 1,148,580 + +0.3 1,148,581 - +2.2 1,148,581 - +1.5 1,148,581 - +1.2 1,148,581 - +2.0 1,148,587 - +0.3 1,148,610 + -2.8 1,148,610 + -0.0 1,148,611 - +0.0 1,148,611 - +1.0 1,148,611 - +2.0 1,148,612 + +1.0 1,148,612 + -1.1 1,148,612 + -1.3 1,148,612 + -1.3 1,148,613 - +0.1 1,148,613 - -0.9 1,148,613 - +0.3 1,148,613 - +0.9 1,148,613 - +2.0 1,148,664 + +1.7 1,148,664 + +1.0 1,148,665 - +0.7 1,149,378 + +0.7 1,149,379 - +2.0 1,149,379 - -1.0 1,150,161 - +0.4 1,150,172 + -0.3 1,150,172 + -0.6 1,150,173 - -0.4 1,150,189 + +0.6 1,150,190 - +1.0 1,150,190 - +1.5 1,150,190 - +0.6 1,150,192 + -0.1 1,150,193 - +0.4
Or see this region's nucleotide sequence