Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0086

Experiment: Def Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0085 and Psest_0086 are separated by 354 nucleotidesPsest_0086 and Psest_0087 are separated by 71 nucleotidesPsest_0087 and Psest_0088 are separated by 273 nucleotides Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component (from data), at 87,238 to 88,191 _0085 Psest_0086: Psest_0086 - hypothetical protein, at 88,546 to 88,971 _0086 Psest_0087: Psest_0087 - hypothetical protein, at 89,043 to 89,285 _0087 Psest_0088: Psest_0088 - phosphonate metabolism protein PhnP, at 89,559 to 90,308 _0088 Position (kb) 88 89Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.988 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.041 kb on - strand, within Psest_0085at 88.041 kb on - strand, within Psest_0085at 88.073 kb on + strand, within Psest_0085at 88.073 kb on + strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.240 kb on - strandat 88.368 kb on + strandat 88.368 kb on + strandat 88.402 kb on - strandat 88.452 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.488 kb on + strandat 88.489 kb on - strandat 88.489 kb on - strandat 88.673 kb on - strand, within Psest_0086at 88.769 kb on - strand, within Psest_0086at 88.769 kb on - strand, within Psest_0086at 88.769 kb on - strand, within Psest_0086at 89.112 kb on + strand, within Psest_0087at 89.112 kb on + strand, within Psest_0087at 89.112 kb on + strand, within Psest_0087at 89.113 kb on - strand, within Psest_0087at 89.113 kb on - strand, within Psest_0087at 89.429 kb on - strandat 89.460 kb on - strandat 89.560 kb on + strandat 89.561 kb on - strandat 89.561 kb on - strandat 89.561 kb on - strandat 89.801 kb on + strand, within Psest_0088at 89.802 kb on - strand, within Psest_0088at 89.834 kb on - strand, within Psest_0088at 89.867 kb on - strand, within Psest_0088

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Vancomycin 0.016 mg/ml
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87,668 + Psest_0085 0.45 +0.3
87,668 + Psest_0085 0.45 -0.9
87,668 + Psest_0085 0.45 +1.3
87,668 + Psest_0085 0.45 -0.3
87,701 + Psest_0085 0.49 +0.7
87,701 + Psest_0085 0.49 +0.7
87,701 + Psest_0085 0.49 +0.2
87,701 + Psest_0085 0.49 +1.5
87,702 - Psest_0085 0.49 -0.7
87,702 - Psest_0085 0.49 +0.2
87,702 - Psest_0085 0.49 -0.2
87,839 + Psest_0085 0.63 +1.3
87,839 + Psest_0085 0.63 +0.9
87,839 + Psest_0085 0.63 +0.8
87,839 + Psest_0085 0.63 +0.7
87,839 + Psest_0085 0.63 +0.7
87,839 + Psest_0085 0.63 -0.1
87,839 + Psest_0085 0.63 -1.0
87,840 - Psest_0085 0.63 -0.3
87,840 - Psest_0085 0.63 +0.8
87,840 - Psest_0085 0.63 +1.5
87,840 - Psest_0085 0.63 -1.7
87,840 - Psest_0085 0.63 +0.2
87,840 - Psest_0085 0.63 +1.4
87,848 + Psest_0085 0.64 -0.9
87,848 + Psest_0085 0.64 -0.9
87,848 + Psest_0085 0.64 +1.5
87,848 + Psest_0085 0.64 +1.3
87,848 + Psest_0085 0.64 +0.6
87,848 + Psest_0085 0.64 -0.1
87,849 - Psest_0085 0.64 -0.3
87,849 - Psest_0085 0.64 -0.9
87,849 - Psest_0085 0.64 -0.7
87,849 - Psest_0085 0.64 +2.2
87,849 - Psest_0085 0.64 +1.3
87,849 - Psest_0085 0.64 -0.9
87,849 - Psest_0085 0.64 +0.2
87,849 - Psest_0085 0.64 -1.0
87,849 - Psest_0085 0.64 -0.3
87,988 + Psest_0085 0.79 -1.4
88,040 + Psest_0085 0.84 +0.2
88,040 + Psest_0085 0.84 +0.6
88,040 + Psest_0085 0.84 +1.0
88,040 + Psest_0085 0.84 -3.2
88,040 + Psest_0085 0.84 +2.3
88,040 + Psest_0085 0.84 +0.1
88,041 - Psest_0085 0.84 +0.1
88,041 - Psest_0085 0.84 +0.0
88,073 + Psest_0085 0.88 +0.5
88,073 + Psest_0085 0.88 -2.4
88,074 - Psest_0085 0.88 -0.1
88,074 - Psest_0085 0.88 -0.2
88,074 - Psest_0085 0.88 +0.8
88,240 - -0.4
88,368 + +1.9
88,368 + +1.9
88,402 - -0.2
88,452 + -0.7
88,486 + +0.5
88,486 + +0.9
88,486 + +1.3
88,486 + -1.4
88,486 + +0.1
88,486 + -0.4
88,487 - -0.5
88,487 - -0.7
88,487 - +0.1
88,487 - -2.4
88,487 - -0.0
88,487 - +0.5
88,488 + -0.7
88,489 - +1.3
88,489 - -0.1
88,673 - Psest_0086 0.30 -0.9
88,769 - Psest_0086 0.52 -0.7
88,769 - Psest_0086 0.52 -0.7
88,769 - Psest_0086 0.52 -0.5
89,112 + Psest_0087 0.28 -0.3
89,112 + Psest_0087 0.28 +0.0
89,112 + Psest_0087 0.28 +0.4
89,113 - Psest_0087 0.29 +0.4
89,113 - Psest_0087 0.29 -1.9
89,429 - +0.7
89,460 - -0.2
89,560 + +0.5
89,561 - -1.3
89,561 - -2.6
89,561 - -0.1
89,801 + Psest_0088 0.32 +0.9
89,802 - Psest_0088 0.32 +0.2
89,834 - Psest_0088 0.37 -0.4
89,867 - Psest_0088 0.41 +0.4

Or see this region's nucleotide sequence