Experiment: Def Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0573 and Psest_0574 are separated by 25 nucleotides Psest_0574 and Psest_0575 are separated by 156 nucleotides Psest_0575 and Psest_0576 are separated by 27 nucleotides
Psest_0573: Psest_0573 - cation diffusion facilitator family transporter, at 627,631 to 628,521
_0573
Psest_0574: Psest_0574 - hypothetical protein, at 628,547 to 628,963
_0574
Psest_0575: Psest_0575 - HrpA-like helicases, at 629,120 to 629,584
_0575
Psest_0576: Psest_0576 - hypothetical protein, at 629,612 to 630,211
_0576
Position (kb) 628
629 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 627.804 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 628.055 kb on + strand, within Psest_0573 at 628.115 kb on + strand, within Psest_0573 at 628.116 kb on - strand, within Psest_0573 at 628.492 kb on - strand at 628.533 kb on - strand at 628.731 kb on + strand, within Psest_0574 at 628.732 kb on - strand, within Psest_0574 at 628.732 kb on - strand, within Psest_0574 at 628.749 kb on + strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.836 kb on - strand, within Psest_0574 at 628.836 kb on - strand, within Psest_0574 at 628.957 kb on + strand at 628.957 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 629.092 kb on - strand at 629.092 kb on - strand at 629.092 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.130 kb on + strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.135 kb on - strand at 629.135 kb on - strand at 629.508 kb on + strand, within Psest_0575 at 629.583 kb on - strand at 629.583 kb on - strand at 629.604 kb on - strand at 629.604 kb on - strand at 629.710 kb on + strand, within Psest_0576 at 629.710 kb on + strand, within Psest_0576 at 629.731 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.761 kb on - strand, within Psest_0576 at 629.770 kb on + strand, within Psest_0576 at 629.771 kb on - strand, within Psest_0576 at 629.783 kb on + strand, within Psest_0576 at 629.783 kb on + strand, within Psest_0576 at 629.819 kb on + strand, within Psest_0576 at 629.819 kb on + strand, within Psest_0576 at 629.820 kb on - strand, within Psest_0576 at 629.820 kb on - strand, within Psest_0576 at 629.866 kb on + strand, within Psest_0576 at 629.867 kb on - strand, within Psest_0576 at 629.880 kb on + strand, within Psest_0576 at 629.880 kb on + strand, within Psest_0576 at 629.881 kb on - strand, within Psest_0576 at 629.945 kb on + strand, within Psest_0576 at 629.945 kb on + strand, within Psest_0576 at 629.946 kb on - strand, within Psest_0576 at 629.946 kb on - strand, within Psest_0576
Per-strain Table
Position Strand Gene LocusTag Fraction Def Vancomycin 0.016 mg/ml remove 627,804 + Psest_0573 0.19 +0.6 627,950 + Psest_0573 0.36 -0.2 627,950 + Psest_0573 0.36 +1.8 627,950 + Psest_0573 0.36 +0.2 627,950 + Psest_0573 0.36 +0.8 627,950 + Psest_0573 0.36 -1.8 627,950 + Psest_0573 0.36 +0.8 627,951 - Psest_0573 0.36 -0.1 627,951 - Psest_0573 0.36 +2.8 627,951 - Psest_0573 0.36 +0.5 627,951 - Psest_0573 0.36 -0.1 627,951 - Psest_0573 0.36 +0.3 627,951 - Psest_0573 0.36 -0.3 627,951 - Psest_0573 0.36 -0.8 628,055 + Psest_0573 0.48 -0.2 628,115 + Psest_0573 0.54 -1.3 628,116 - Psest_0573 0.54 -0.3 628,492 - -1.0 628,533 - -1.4 628,731 + Psest_0574 0.44 -0.2 628,732 - Psest_0574 0.44 -0.6 628,732 - Psest_0574 0.44 -0.2 628,749 + Psest_0574 0.48 +1.8 628,750 - Psest_0574 0.49 +0.2 628,750 - Psest_0574 0.49 -1.6 628,750 - Psest_0574 0.49 -1.3 628,750 - Psest_0574 0.49 -1.0 628,750 - Psest_0574 0.49 -0.2 628,803 + Psest_0574 0.61 -1.0 628,803 + Psest_0574 0.61 -0.2 628,803 + Psest_0574 0.61 +0.8 628,803 + Psest_0574 0.61 +0.8 628,803 + Psest_0574 0.61 -0.2 628,804 - Psest_0574 0.62 +0.5 628,804 - Psest_0574 0.62 +1.6 628,804 - Psest_0574 0.62 -0.2 628,804 - Psest_0574 0.62 -1.0 628,804 - Psest_0574 0.62 -0.2 628,804 - Psest_0574 0.62 -1.9 628,804 - Psest_0574 0.62 +0.8 628,804 - Psest_0574 0.62 +0.4 628,804 - Psest_0574 0.62 -0.5 628,804 - Psest_0574 0.62 -1.2 628,804 - Psest_0574 0.62 +0.2 628,804 - Psest_0574 0.62 -0.1 628,836 - Psest_0574 0.69 -2.0 628,836 - Psest_0574 0.69 -1.9 628,957 + +0.8 628,957 + +0.8 628,992 + +0.8 628,992 + +1.8 628,992 + +2.4 628,992 + -0.8 628,992 + -0.4 628,992 + +0.8 628,992 + +0.5 628,992 + +0.2 628,992 + -1.6 628,992 + +0.8 628,992 + +0.2 628,992 + -0.2 628,992 + +2.8 628,992 + -0.2 628,992 + -0.5 628,992 + +0.8 628,992 + +0.2 628,992 + -1.3 628,993 - +0.6 628,993 - +1.0 628,993 - -1.0 628,993 - -0.5 628,993 - +0.8 628,993 - -0.5 628,993 - -0.1 628,993 - +1.5 628,993 - -0.2 628,994 + +1.2 628,994 + +0.2 628,994 + -0.2 628,994 + +0.8 628,994 + -0.5 628,994 + -1.5 628,994 + +1.8 628,994 + -0.2 628,994 + +1.1 628,994 + -0.2 628,994 + +1.8 628,994 + +1.8 628,994 + +0.2 628,994 + -2.5 628,994 + -1.0 628,994 + +0.0 628,994 + +2.4 628,994 + +0.5 628,994 + +2.8 628,994 + -0.2 628,994 + +2.8 628,995 - +1.8 628,995 - +0.1 628,995 - -1.8 628,995 - +0.8 628,995 - -0.4 628,995 - +1.2 628,995 - -1.0 628,995 - +0.4 628,995 - +1.8 628,995 - +1.2 628,995 - +1.0 628,995 - -0.2 628,995 - +1.0 628,995 - +0.2 628,995 - -1.0 628,995 - +2.1 628,995 - -0.5 628,995 - -0.0 628,995 - -0.7 628,995 - +1.8 628,995 - +0.2 628,995 - -0.3 628,995 - -2.0 628,995 - -0.1 628,995 - +0.8 628,995 - +0.8 628,995 - +0.8 628,995 - -0.9 628,995 - +0.6 628,995 - +1.8 628,995 - -2.3 628,995 - +0.1 628,995 - +2.5 629,092 - -0.6 629,092 - -0.3 629,092 - -1.0 629,094 - +0.2 629,094 - -0.2 629,094 - +1.1 629,094 - +2.1 629,094 - +0.0 629,130 + +0.8 629,131 - +0.3 629,131 - -0.2 629,131 - -0.9 629,131 - +0.7 629,135 - +0.2 629,135 - -0.8 629,508 + Psest_0575 0.83 +1.0 629,583 - +0.8 629,583 - +0.2 629,604 - +0.1 629,604 - +0.2 629,710 + Psest_0576 0.16 +1.5 629,710 + Psest_0576 0.16 -0.8 629,731 + Psest_0576 0.20 -0.8 629,757 + Psest_0576 0.24 -0.6 629,757 + Psest_0576 0.24 +0.3 629,757 + Psest_0576 0.24 -0.8 629,757 + Psest_0576 0.24 +0.0 629,757 + Psest_0576 0.24 +0.5 629,757 + Psest_0576 0.24 -1.3 629,757 + Psest_0576 0.24 +0.6 629,757 + Psest_0576 0.24 +0.4 629,757 + Psest_0576 0.24 +2.1 629,758 - Psest_0576 0.24 +0.8 629,758 - Psest_0576 0.24 +3.4 629,758 - Psest_0576 0.24 +0.6 629,758 - Psest_0576 0.24 +1.2 629,758 - Psest_0576 0.24 -0.5 629,758 - Psest_0576 0.24 -0.1 629,758 - Psest_0576 0.24 +1.8 629,758 - Psest_0576 0.24 +0.8 629,760 + Psest_0576 0.25 +2.5 629,760 + Psest_0576 0.25 -0.2 629,760 + Psest_0576 0.25 +0.1 629,760 + Psest_0576 0.25 -0.8 629,760 + Psest_0576 0.25 -0.7 629,760 + Psest_0576 0.25 -0.7 629,760 + Psest_0576 0.25 +0.7 629,761 - Psest_0576 0.25 -1.5 629,770 + Psest_0576 0.26 +0.4 629,771 - Psest_0576 0.27 -1.8 629,783 + Psest_0576 0.28 -0.1 629,783 + Psest_0576 0.28 -1.9 629,819 + Psest_0576 0.34 +0.2 629,819 + Psest_0576 0.34 -2.0 629,820 - Psest_0576 0.35 +0.0 629,820 - Psest_0576 0.35 -1.7 629,866 + Psest_0576 0.42 +0.7 629,867 - Psest_0576 0.42 +0.8 629,880 + Psest_0576 0.45 -1.2 629,880 + Psest_0576 0.45 -0.8 629,881 - Psest_0576 0.45 -0.2 629,945 + Psest_0576 0.56 +1.8 629,945 + Psest_0576 0.56 -1.3 629,946 - Psest_0576 0.56 +0.2 629,946 - Psest_0576 0.56 +1.3
Or see this region's nucleotide sequence