Experiment: Def Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0505 and Psest_0506 are separated by 10 nucleotides Psest_0506 and Psest_0507 are separated by 27 nucleotides Psest_0507 and Psest_0508 are separated by 216 nucleotides
Psest_0505: Psest_0505 - Putative effector of murein hydrolase, at 559,098 to 559,817
_0505
Psest_0506: Psest_0506 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 559,828 to 560,412
_0506
Psest_0507: Psest_0507 - Uncharacterized membrane-associated protein, at 560,440 to 561,759
_0507
Psest_0508: Psest_0508 - gamma-glutamyl phosphate reductase, at 561,976 to 563,241
_0508
Position (kb) 560
561
562 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 559.859 kb on + strand at 559.860 kb on - strand at 559.860 kb on - strand at 559.860 kb on - strand at 559.860 kb on - strand at 559.906 kb on + strand, within Psest_0506 at 559.907 kb on - strand, within Psest_0506 at 559.955 kb on + strand, within Psest_0506 at 559.955 kb on + strand, within Psest_0506 at 559.956 kb on - strand, within Psest_0506 at 560.299 kb on + strand, within Psest_0506 at 560.453 kb on + strand at 560.453 kb on + strand at 560.454 kb on - strand at 560.454 kb on - strand at 560.654 kb on + strand, within Psest_0507 at 560.654 kb on + strand, within Psest_0507 at 560.655 kb on - strand, within Psest_0507 at 560.805 kb on - strand, within Psest_0507 at 560.805 kb on - strand, within Psest_0507 at 560.956 kb on + strand, within Psest_0507 at 560.956 kb on + strand, within Psest_0507 at 560.957 kb on - strand, within Psest_0507 at 561.211 kb on + strand, within Psest_0507 at 561.212 kb on - strand, within Psest_0507 at 561.212 kb on - strand, within Psest_0507 at 561.288 kb on - strand, within Psest_0507 at 561.288 kb on - strand, within Psest_0507 at 561.288 kb on - strand, within Psest_0507 at 561.440 kb on + strand, within Psest_0507 at 561.440 kb on + strand, within Psest_0507 at 561.440 kb on + strand, within Psest_0507 at 561.441 kb on - strand, within Psest_0507 at 561.441 kb on - strand, within Psest_0507 at 561.763 kb on + strand at 561.800 kb on + strand at 561.800 kb on + strand at 561.801 kb on - strand at 561.801 kb on - strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.935 kb on + strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.936 kb on - strand at 561.937 kb on + strand at 561.969 kb on + strand at 561.969 kb on + strand at 561.969 kb on + strand at 561.969 kb on + strand at 561.997 kb on + strand at 561.997 kb on + strand at 561.997 kb on + strand at 562.248 kb on + strand, within Psest_0508 at 562.248 kb on + strand, within Psest_0508 at 562.288 kb on + strand, within Psest_0508 at 562.288 kb on + strand, within Psest_0508 at 562.288 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.351 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508 at 562.678 kb on + strand, within Psest_0508
Per-strain Table
Position Strand Gene LocusTag Fraction Def Vancomycin 0.016 mg/ml remove 559,859 + -0.5 559,860 - +0.1 559,860 - -0.2 559,860 - -0.2 559,860 - +0.8 559,906 + Psest_0506 0.13 +0.4 559,907 - Psest_0506 0.14 -0.2 559,955 + Psest_0506 0.22 +0.8 559,955 + Psest_0506 0.22 +0.0 559,956 - Psest_0506 0.22 +0.4 560,299 + Psest_0506 0.81 +0.4 560,453 + -0.5 560,453 + -1.6 560,454 - +0.3 560,454 - -1.2 560,654 + Psest_0507 0.16 +0.8 560,654 + Psest_0507 0.16 -2.0 560,655 - Psest_0507 0.16 -1.9 560,805 - Psest_0507 0.28 +0.8 560,805 - Psest_0507 0.28 -2.5 560,956 + Psest_0507 0.39 -1.3 560,956 + Psest_0507 0.39 -1.0 560,957 - Psest_0507 0.39 -2.7 561,211 + Psest_0507 0.58 -0.9 561,212 - Psest_0507 0.58 -1.3 561,212 - Psest_0507 0.58 -1.9 561,288 - Psest_0507 0.64 -1.1 561,288 - Psest_0507 0.64 +0.1 561,288 - Psest_0507 0.64 -3.0 561,440 + Psest_0507 0.76 -1.6 561,440 + Psest_0507 0.76 -1.9 561,440 + Psest_0507 0.76 -3.0 561,441 - Psest_0507 0.76 +0.6 561,441 - Psest_0507 0.76 -0.9 561,763 + +1.1 561,800 + +1.3 561,800 + +0.1 561,801 - +1.3 561,801 - +0.6 561,935 + +1.3 561,935 + +2.4 561,935 + +0.9 561,935 + -1.5 561,935 + -0.1 561,935 + +0.8 561,935 + +1.8 561,935 + +0.5 561,935 + +0.7 561,935 + -0.4 561,935 + +0.0 561,935 + +0.5 561,935 + +0.3 561,935 + +0.7 561,935 + +0.8 561,935 + +0.7 561,935 + +1.4 561,935 + +0.8 561,936 - -1.5 561,936 - -1.1 561,936 - -2.4 561,936 - -0.2 561,936 - -2.1 561,936 - -1.2 561,936 - -1.0 561,936 - -0.3 561,936 - -0.9 561,936 - -1.8 561,936 - -0.9 561,936 - -1.1 561,936 - +0.8 561,936 - -2.2 561,936 - -2.3 561,936 - -1.9 561,936 - -1.2 561,936 - -1.7 561,936 - -1.0 561,936 - -2.0 561,936 - -0.7 561,937 + +0.7 561,969 + -0.3 561,969 + -0.2 561,969 + +0.0 561,969 + -0.6 561,997 + -0.2 561,997 + -1.9 561,997 + -1.6 562,248 + Psest_0508 0.21 -1.9 562,248 + Psest_0508 0.21 -2.9 562,288 + Psest_0508 0.25 -1.4 562,288 + Psest_0508 0.25 -3.9 562,288 + Psest_0508 0.25 -3.0 562,351 + Psest_0508 0.30 -1.9 562,351 + Psest_0508 0.30 -1.6 562,351 + Psest_0508 0.30 -3.2 562,351 + Psest_0508 0.30 -1.5 562,678 + Psest_0508 0.55 -0.3 562,678 + Psest_0508 0.55 -1.0 562,678 + Psest_0508 0.55 -2.0 562,678 + Psest_0508 0.55 -4.1 562,678 + Psest_0508 0.55 -2.5 562,678 + Psest_0508 0.55 -2.0 562,678 + Psest_0508 0.55 -2.6 562,678 + Psest_0508 0.55 -2.6 562,678 + Psest_0508 0.55 -1.3 562,678 + Psest_0508 0.55 -1.7 562,678 + Psest_0508 0.55 -2.9 562,678 + Psest_0508 0.55 -2.3
Or see this region's nucleotide sequence