Experiment: Def Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4255 and Psest_4256 overlap by 4 nucleotides Psest_4256 and Psest_4257 are separated by 2 nucleotides Psest_4257 and Psest_4258 overlap by 4 nucleotides
Psest_4255: Psest_4255 - conserved hypothetical integral membrane protein, at 4,442,928 to 4,444,076
_4255
Psest_4256: Psest_4256 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 4,444,073 to 4,444,858
_4256
Psest_4257: Psest_4257 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 4,444,861 to 4,445,799
_4257
Psest_4258: Psest_4258 - ABC-type uncharacterized transport system, auxiliary component, at 4,445,796 to 4,446,419
_4258
Position (kb) 4444
4445 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4443.546 kb on + strand, within Psest_4255 at 4443.546 kb on + strand, within Psest_4255 at 4443.546 kb on + strand, within Psest_4255 at 4443.546 kb on + strand, within Psest_4255 at 4443.546 kb on + strand, within Psest_4255 at 4443.546 kb on + strand, within Psest_4255 at 4443.546 kb on + strand, within Psest_4255 at 4443.546 kb on + strand, within Psest_4255 at 4443.715 kb on + strand, within Psest_4255 at 4443.715 kb on + strand, within Psest_4255 at 4443.715 kb on + strand, within Psest_4255 at 4443.715 kb on + strand, within Psest_4255 at 4443.716 kb on - strand, within Psest_4255 at 4443.721 kb on + strand, within Psest_4255 at 4443.722 kb on - strand, within Psest_4255 at 4444.102 kb on - strand at 4444.102 kb on - strand at 4444.506 kb on + strand, within Psest_4256 at 4444.507 kb on - strand, within Psest_4256 at 4444.507 kb on - strand, within Psest_4256 at 4444.691 kb on - strand, within Psest_4256 at 4444.698 kb on - strand, within Psest_4256 at 4444.698 kb on - strand, within Psest_4256 at 4444.799 kb on + strand at 4444.799 kb on + strand at 4444.799 kb on + strand at 4444.800 kb on - strand at 4444.800 kb on - strand at 4444.800 kb on - strand at 4444.905 kb on - strand at 4444.969 kb on + strand, within Psest_4257 at 4444.969 kb on + strand, within Psest_4257 at 4444.975 kb on + strand, within Psest_4257 at 4444.975 kb on + strand, within Psest_4257 at 4444.976 kb on - strand, within Psest_4257 at 4444.976 kb on - strand, within Psest_4257 at 4444.976 kb on - strand, within Psest_4257 at 4444.976 kb on - strand, within Psest_4257 at 4444.976 kb on - strand, within Psest_4257 at 4444.976 kb on - strand, within Psest_4257 at 4444.976 kb on - strand, within Psest_4257 at 4444.979 kb on - strand, within Psest_4257 at 4444.979 kb on - strand, within Psest_4257 at 4445.035 kb on + strand, within Psest_4257 at 4445.035 kb on + strand, within Psest_4257 at 4445.035 kb on + strand, within Psest_4257 at 4445.036 kb on - strand, within Psest_4257 at 4445.119 kb on + strand, within Psest_4257 at 4445.119 kb on + strand, within Psest_4257 at 4445.120 kb on - strand, within Psest_4257
Per-strain Table
Position Strand Gene LocusTag Fraction Def Vancomycin 0.016 mg/ml remove 4,443,546 + Psest_4255 0.54 +0.0 4,443,546 + Psest_4255 0.54 +0.2 4,443,546 + Psest_4255 0.54 -0.4 4,443,546 + Psest_4255 0.54 -0.3 4,443,546 + Psest_4255 0.54 -0.4 4,443,546 + Psest_4255 0.54 +2.2 4,443,546 + Psest_4255 0.54 -0.8 4,443,546 + Psest_4255 0.54 -1.0 4,443,715 + Psest_4255 0.68 +0.8 4,443,715 + Psest_4255 0.68 -0.2 4,443,715 + Psest_4255 0.68 +0.2 4,443,715 + Psest_4255 0.68 +1.8 4,443,716 - Psest_4255 0.69 +1.2 4,443,721 + Psest_4255 0.69 +0.5 4,443,722 - Psest_4255 0.69 -0.4 4,444,102 - +0.2 4,444,102 - -0.5 4,444,506 + Psest_4256 0.55 +1.8 4,444,507 - Psest_4256 0.55 +0.4 4,444,507 - Psest_4256 0.55 +0.2 4,444,691 - Psest_4256 0.79 -2.1 4,444,698 - Psest_4256 0.80 +0.5 4,444,698 - Psest_4256 0.80 -1.5 4,444,799 + +1.1 4,444,799 + +0.4 4,444,799 + +0.2 4,444,800 - -0.2 4,444,800 - +1.8 4,444,800 - +1.4 4,444,905 - -0.5 4,444,969 + Psest_4257 0.12 +1.2 4,444,969 + Psest_4257 0.12 +0.4 4,444,975 + Psest_4257 0.12 +1.4 4,444,975 + Psest_4257 0.12 +0.5 4,444,976 - Psest_4257 0.12 -0.5 4,444,976 - Psest_4257 0.12 -2.5 4,444,976 - Psest_4257 0.12 +0.1 4,444,976 - Psest_4257 0.12 -0.2 4,444,976 - Psest_4257 0.12 +0.1 4,444,976 - Psest_4257 0.12 +1.0 4,444,976 - Psest_4257 0.12 +0.8 4,444,979 - Psest_4257 0.13 +0.2 4,444,979 - Psest_4257 0.13 +0.2 4,445,035 + Psest_4257 0.19 +0.4 4,445,035 + Psest_4257 0.19 -0.2 4,445,035 + Psest_4257 0.19 +1.2 4,445,036 - Psest_4257 0.19 +0.8 4,445,119 + Psest_4257 0.27 -1.9 4,445,119 + Psest_4257 0.27 +0.8 4,445,120 - Psest_4257 0.28 -0.8
Or see this region's nucleotide sequence