Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0352

Experiment: Def Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0350 and Psest_0351 are separated by 181 nucleotidesPsest_0351 and Psest_0352 are separated by 11 nucleotidesPsest_0352 and Psest_0353 are separated by 19 nucleotides Psest_0350: Psest_0350 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 373,499 to 375,433 _0350 Psest_0351: Psest_0351 - hypothetical protein, at 375,615 to 376,019 _0351 Psest_0352: Psest_0352 - hypothetical protein, at 376,031 to 377,200 _0352 Psest_0353: Psest_0353 - Methyl-accepting chemotaxis protein, at 377,220 to 378,842 _0353 Position (kb) 376 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 375.225 kb on + strand, within Psest_0350at 375.225 kb on + strand, within Psest_0350at 375.225 kb on + strand, within Psest_0350at 375.225 kb on + strand, within Psest_0350at 375.225 kb on + strand, within Psest_0350at 375.225 kb on + strand, within Psest_0350at 375.225 kb on + strand, within Psest_0350at 375.225 kb on + strand, within Psest_0350at 375.225 kb on + strand, within Psest_0350at 375.225 kb on + strand, within Psest_0350at 375.225 kb on + strand, within Psest_0350at 375.226 kb on - strand, within Psest_0350at 375.226 kb on - strand, within Psest_0350at 375.226 kb on - strand, within Psest_0350at 375.226 kb on - strand, within Psest_0350at 375.279 kb on + strandat 375.279 kb on + strandat 375.279 kb on + strandat 375.279 kb on + strandat 375.279 kb on + strandat 375.279 kb on + strandat 375.280 kb on - strandat 375.280 kb on - strandat 375.280 kb on - strandat 375.348 kb on + strandat 375.348 kb on + strandat 375.348 kb on + strandat 375.349 kb on - strandat 375.349 kb on - strandat 375.349 kb on - strandat 375.349 kb on - strandat 375.349 kb on - strandat 375.379 kb on + strandat 375.380 kb on - strandat 375.389 kb on + strandat 375.389 kb on + strandat 375.492 kb on + strandat 375.492 kb on + strandat 375.492 kb on + strandat 375.493 kb on - strandat 375.560 kb on - strandat 375.562 kb on + strandat 375.562 kb on + strandat 375.562 kb on + strandat 375.562 kb on + strandat 375.562 kb on + strandat 375.562 kb on + strandat 375.563 kb on - strandat 375.563 kb on - strandat 375.563 kb on - strandat 375.563 kb on - strandat 375.571 kb on - strandat 375.598 kb on + strandat 375.598 kb on + strandat 375.670 kb on + strand, within Psest_0351at 375.671 kb on - strand, within Psest_0351at 375.708 kb on + strand, within Psest_0351at 375.775 kb on + strand, within Psest_0351at 375.775 kb on + strand, within Psest_0351at 375.817 kb on + strand, within Psest_0351at 375.817 kb on + strand, within Psest_0351at 375.817 kb on + strand, within Psest_0351at 375.817 kb on + strand, within Psest_0351at 375.818 kb on - strand, within Psest_0351at 375.818 kb on - strand, within Psest_0351at 375.818 kb on - strand, within Psest_0351at 375.818 kb on - strand, within Psest_0351at 375.818 kb on - strand, within Psest_0351at 375.818 kb on - strand, within Psest_0351at 375.818 kb on - strand, within Psest_0351at 375.818 kb on - strand, within Psest_0351at 375.818 kb on - strand, within Psest_0351at 375.818 kb on - strand, within Psest_0351at 376.038 kb on - strandat 376.074 kb on + strandat 376.074 kb on + strandat 376.075 kb on - strandat 376.075 kb on - strandat 376.075 kb on - strandat 376.075 kb on - strandat 376.194 kb on + strand, within Psest_0352at 376.194 kb on + strand, within Psest_0352at 376.194 kb on + strand, within Psest_0352at 376.194 kb on + strand, within Psest_0352at 376.195 kb on - strand, within Psest_0352at 376.195 kb on - strand, within Psest_0352at 376.195 kb on - strand, within Psest_0352at 376.230 kb on + strand, within Psest_0352at 376.230 kb on + strand, within Psest_0352at 376.231 kb on - strand, within Psest_0352at 376.231 kb on - strand, within Psest_0352at 376.231 kb on - strand, within Psest_0352at 376.287 kb on + strand, within Psest_0352at 376.287 kb on + strand, within Psest_0352at 376.287 kb on + strand, within Psest_0352at 376.287 kb on + strand, within Psest_0352at 376.287 kb on + strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.335 kb on + strand, within Psest_0352at 376.335 kb on + strand, within Psest_0352at 376.335 kb on + strand, within Psest_0352at 376.335 kb on + strand, within Psest_0352at 376.335 kb on + strand, within Psest_0352at 376.336 kb on - strand, within Psest_0352at 376.419 kb on + strand, within Psest_0352at 376.419 kb on + strand, within Psest_0352at 376.420 kb on - strand, within Psest_0352at 376.425 kb on + strand, within Psest_0352at 376.456 kb on + strand, within Psest_0352at 376.456 kb on + strand, within Psest_0352at 376.457 kb on - strand, within Psest_0352at 376.457 kb on - strand, within Psest_0352at 376.554 kb on + strand, within Psest_0352at 376.555 kb on - strand, within Psest_0352at 376.555 kb on - strand, within Psest_0352at 376.650 kb on + strand, within Psest_0352at 376.650 kb on + strand, within Psest_0352at 376.650 kb on + strand, within Psest_0352at 376.650 kb on + strand, within Psest_0352at 376.651 kb on - strand, within Psest_0352at 376.651 kb on - strand, within Psest_0352at 376.653 kb on + strand, within Psest_0352at 376.653 kb on + strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.722 kb on + strand, within Psest_0352at 376.722 kb on + strand, within Psest_0352at 376.722 kb on + strand, within Psest_0352at 376.722 kb on + strand, within Psest_0352at 376.743 kb on + strand, within Psest_0352at 376.743 kb on + strand, within Psest_0352at 376.743 kb on + strand, within Psest_0352at 376.743 kb on + strand, within Psest_0352at 376.743 kb on + strand, within Psest_0352at 376.744 kb on - strand, within Psest_0352at 376.744 kb on - strand, within Psest_0352at 376.744 kb on - strand, within Psest_0352at 376.744 kb on - strand, within Psest_0352at 376.744 kb on - strand, within Psest_0352at 376.768 kb on - strand, within Psest_0352at 376.768 kb on - strand, within Psest_0352at 376.797 kb on + strand, within Psest_0352at 376.798 kb on - strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.828 kb on - strand, within Psest_0352at 376.828 kb on - strand, within Psest_0352at 376.828 kb on - strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.984 kb on - strand, within Psest_0352at 377.055 kb on + strand, within Psest_0352at 377.055 kb on + strand, within Psest_0352at 377.055 kb on + strand, within Psest_0352at 377.056 kb on - strand, within Psest_0352at 377.056 kb on - strand, within Psest_0352at 377.056 kb on - strand, within Psest_0352at 377.215 kb on - strandat 377.524 kb on - strand, within Psest_0353at 377.524 kb on - strand, within Psest_0353at 377.724 kb on + strand, within Psest_0353at 377.766 kb on - strand, within Psest_0353at 378.004 kb on + strand, within Psest_0353at 378.004 kb on + strand, within Psest_0353at 378.004 kb on + strand, within Psest_0353at 378.004 kb on + strand, within Psest_0353at 378.004 kb on + strand, within Psest_0353at 378.005 kb on - strand, within Psest_0353at 378.005 kb on - strand, within Psest_0353at 378.005 kb on - strand, within Psest_0353at 378.005 kb on - strand, within Psest_0353at 378.005 kb on - strand, within Psest_0353

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Vancomycin 0.016 mg/ml
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375,225 + Psest_0350 0.89 +0.1
375,225 + Psest_0350 0.89 +1.5
375,225 + Psest_0350 0.89 -2.8
375,225 + Psest_0350 0.89 -0.9
375,225 + Psest_0350 0.89 -0.0
375,225 + Psest_0350 0.89 +0.1
375,225 + Psest_0350 0.89 +0.0
375,225 + Psest_0350 0.89 +0.1
375,225 + Psest_0350 0.89 -0.3
375,225 + Psest_0350 0.89 +0.2
375,225 + Psest_0350 0.89 +0.3
375,226 - Psest_0350 0.89 -0.8
375,226 - Psest_0350 0.89 -1.0
375,226 - Psest_0350 0.89 -1.1
375,226 - Psest_0350 0.89 -0.0
375,279 + -1.6
375,279 + -1.0
375,279 + +0.6
375,279 + +0.3
375,279 + -0.6
375,279 + +0.7
375,280 - -0.6
375,280 - -0.3
375,280 - +1.0
375,348 + -1.4
375,348 + +2.1
375,348 + -1.9
375,349 - +0.2
375,349 - +0.7
375,349 - +0.1
375,349 - +0.9
375,349 - -1.2
375,379 + +0.2
375,380 - -0.2
375,389 + -0.4
375,389 + -0.2
375,492 + +2.1
375,492 + +0.7
375,492 + +0.3
375,493 - +0.3
375,560 - +2.5
375,562 + +0.3
375,562 + -0.6
375,562 + -0.9
375,562 + +0.1
375,562 + +1.7
375,562 + -0.2
375,563 - +0.7
375,563 - -0.1
375,563 - +0.1
375,563 - -1.1
375,571 - +0.3
375,598 + -0.0
375,598 + +0.2
375,670 + Psest_0351 0.14 +0.3
375,671 - Psest_0351 0.14 -0.3
375,708 + Psest_0351 0.23 +0.2
375,775 + Psest_0351 0.40 -0.9
375,775 + Psest_0351 0.40 -0.2
375,817 + Psest_0351 0.50 +0.7
375,817 + Psest_0351 0.50 +0.0
375,817 + Psest_0351 0.50 +0.8
375,817 + Psest_0351 0.50 +1.9
375,818 - Psest_0351 0.50 +0.7
375,818 - Psest_0351 0.50 +1.0
375,818 - Psest_0351 0.50 +0.2
375,818 - Psest_0351 0.50 +1.1
375,818 - Psest_0351 0.50 +0.3
375,818 - Psest_0351 0.50 -0.2
375,818 - Psest_0351 0.50 +0.8
375,818 - Psest_0351 0.50 +0.3
375,818 - Psest_0351 0.50 -1.8
375,818 - Psest_0351 0.50 -0.7
376,038 - +0.3
376,074 + +0.6
376,074 + -0.7
376,075 - -0.2
376,075 - -2.1
376,075 - -0.7
376,075 - +0.8
376,194 + Psest_0352 0.14 -0.7
376,194 + Psest_0352 0.14 +0.2
376,194 + Psest_0352 0.14 +0.9
376,194 + Psest_0352 0.14 -1.1
376,195 - Psest_0352 0.14 -0.8
376,195 - Psest_0352 0.14 -0.1
376,195 - Psest_0352 0.14 +1.1
376,230 + Psest_0352 0.17 +1.0
376,230 + Psest_0352 0.17 +1.6
376,231 - Psest_0352 0.17 +2.1
376,231 - Psest_0352 0.17 -0.3
376,231 - Psest_0352 0.17 +0.4
376,287 + Psest_0352 0.22 -0.2
376,287 + Psest_0352 0.22 -0.2
376,287 + Psest_0352 0.22 -0.6
376,287 + Psest_0352 0.22 -0.7
376,287 + Psest_0352 0.22 +1.0
376,288 - Psest_0352 0.22 +0.5
376,288 - Psest_0352 0.22 +0.0
376,288 - Psest_0352 0.22 -1.3
376,288 - Psest_0352 0.22 -0.6
376,288 - Psest_0352 0.22 -0.1
376,288 - Psest_0352 0.22 +0.3
376,288 - Psest_0352 0.22 +0.5
376,288 - Psest_0352 0.22 -1.8
376,288 - Psest_0352 0.22 +0.4
376,288 - Psest_0352 0.22 +1.8
376,288 - Psest_0352 0.22 -0.7
376,335 + Psest_0352 0.26 +1.1
376,335 + Psest_0352 0.26 -0.7
376,335 + Psest_0352 0.26 +0.0
376,335 + Psest_0352 0.26 -1.3
376,335 + Psest_0352 0.26 -0.3
376,336 - Psest_0352 0.26 -0.0
376,419 + Psest_0352 0.33 -1.1
376,419 + Psest_0352 0.33 -0.3
376,420 - Psest_0352 0.33 +0.3
376,425 + Psest_0352 0.34 -0.2
376,456 + Psest_0352 0.36 +1.9
376,456 + Psest_0352 0.36 -0.6
376,457 - Psest_0352 0.36 +1.9
376,457 - Psest_0352 0.36 +0.3
376,554 + Psest_0352 0.45 +0.8
376,555 - Psest_0352 0.45 -0.5
376,555 - Psest_0352 0.45 +1.9
376,650 + Psest_0352 0.53 +1.1
376,650 + Psest_0352 0.53 +0.5
376,650 + Psest_0352 0.53 -0.1
376,650 + Psest_0352 0.53 -1.4
376,651 - Psest_0352 0.53 +0.4
376,651 - Psest_0352 0.53 +1.5
376,653 + Psest_0352 0.53 +0.3
376,653 + Psest_0352 0.53 +0.6
376,654 - Psest_0352 0.53 +1.0
376,654 - Psest_0352 0.53 -1.3
376,654 - Psest_0352 0.53 +0.7
376,654 - Psest_0352 0.53 -1.2
376,654 - Psest_0352 0.53 -0.4
376,654 - Psest_0352 0.53 +0.1
376,654 - Psest_0352 0.53 -1.0
376,722 + Psest_0352 0.59 +0.8
376,722 + Psest_0352 0.59 -0.4
376,722 + Psest_0352 0.59 -0.9
376,722 + Psest_0352 0.59 +0.1
376,743 + Psest_0352 0.61 +0.1
376,743 + Psest_0352 0.61 -0.6
376,743 + Psest_0352 0.61 -0.3
376,743 + Psest_0352 0.61 +0.4
376,743 + Psest_0352 0.61 -0.1
376,744 - Psest_0352 0.61 +1.7
376,744 - Psest_0352 0.61 -0.4
376,744 - Psest_0352 0.61 +0.7
376,744 - Psest_0352 0.61 +0.3
376,744 - Psest_0352 0.61 +0.5
376,768 - Psest_0352 0.63 -0.0
376,768 - Psest_0352 0.63 +0.9
376,797 + Psest_0352 0.65 -0.5
376,798 - Psest_0352 0.66 -1.1
376,827 + Psest_0352 0.68 -1.7
376,827 + Psest_0352 0.68 +0.4
376,827 + Psest_0352 0.68 +0.5
376,827 + Psest_0352 0.68 -1.3
376,827 + Psest_0352 0.68 -0.1
376,827 + Psest_0352 0.68 +1.4
376,827 + Psest_0352 0.68 +0.6
376,828 - Psest_0352 0.68 -0.3
376,828 - Psest_0352 0.68 -0.2
376,828 - Psest_0352 0.68 -0.2
376,833 + Psest_0352 0.69 +0.2
376,833 + Psest_0352 0.69 +0.3
376,833 + Psest_0352 0.69 +1.9
376,833 + Psest_0352 0.69 +0.4
376,833 + Psest_0352 0.69 -0.4
376,833 + Psest_0352 0.69 +0.6
376,833 + Psest_0352 0.69 +1.5
376,833 + Psest_0352 0.69 +0.3
376,834 - Psest_0352 0.69 -0.6
376,834 - Psest_0352 0.69 +0.4
376,834 - Psest_0352 0.69 -0.4
376,834 - Psest_0352 0.69 +0.0
376,834 - Psest_0352 0.69 -0.0
376,834 - Psest_0352 0.69 +0.2
376,834 - Psest_0352 0.69 -0.6
376,834 - Psest_0352 0.69 -1.3
376,984 - Psest_0352 0.81 -0.8
377,055 + Psest_0352 0.88 -0.8
377,055 + Psest_0352 0.88 +0.2
377,055 + Psest_0352 0.88 -0.7
377,056 - Psest_0352 0.88 +1.5
377,056 - Psest_0352 0.88 -1.3
377,056 - Psest_0352 0.88 -1.1
377,215 - +1.1
377,524 - Psest_0353 0.19 -0.9
377,524 - Psest_0353 0.19 -0.1
377,724 + Psest_0353 0.31 +1.7
377,766 - Psest_0353 0.34 -0.1
378,004 + Psest_0353 0.48 -1.0
378,004 + Psest_0353 0.48 -0.0
378,004 + Psest_0353 0.48 +0.1
378,004 + Psest_0353 0.48 +0.7
378,004 + Psest_0353 0.48 -0.7
378,005 - Psest_0353 0.48 -1.7
378,005 - Psest_0353 0.48 +0.7
378,005 - Psest_0353 0.48 +0.5
378,005 - Psest_0353 0.48 -1.2
378,005 - Psest_0353 0.48 +0.7

Or see this region's nucleotide sequence