Experiment: Def Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2669 and Psest_2670 are separated by 76 nucleotides Psest_2670 and Psest_2671 are separated by 125 nucleotides
Psest_2669: Psest_2669 - Acyl-CoA dehydrogenases, at 2,856,585 to 2,857,748
_2669
Psest_2670: Psest_2670 - Uncharacterized conserved protein, at 2,857,825 to 2,858,646
_2670
Psest_2671: Psest_2671 - Transcriptional regulator, at 2,858,772 to 2,859,665
_2671
Position (kb)
2857
2858
2859 Strain fitness (log2 ratio)
-1
0
1
2 at 2856.949 kb on + strand, within Psest_2669 at 2856.949 kb on + strand, within Psest_2669 at 2857.039 kb on + strand, within Psest_2669 at 2857.040 kb on - strand, within Psest_2669 at 2857.040 kb on - strand, within Psest_2669 at 2857.275 kb on - strand, within Psest_2669 at 2857.309 kb on + strand, within Psest_2669 at 2857.309 kb on + strand, within Psest_2669 at 2857.309 kb on + strand, within Psest_2669 at 2857.309 kb on + strand, within Psest_2669 at 2857.309 kb on + strand, within Psest_2669 at 2857.309 kb on + strand, within Psest_2669 at 2857.309 kb on + strand, within Psest_2669 at 2857.309 kb on + strand, within Psest_2669 at 2857.310 kb on - strand, within Psest_2669 at 2857.310 kb on - strand, within Psest_2669 at 2857.310 kb on - strand, within Psest_2669 at 2857.310 kb on - strand, within Psest_2669 at 2857.310 kb on - strand, within Psest_2669 at 2857.310 kb on - strand, within Psest_2669 at 2857.426 kb on + strand, within Psest_2669 at 2857.426 kb on + strand, within Psest_2669 at 2857.426 kb on + strand, within Psest_2669 at 2857.427 kb on - strand, within Psest_2669 at 2857.427 kb on - strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.477 kb on + strand, within Psest_2669 at 2857.478 kb on - strand, within Psest_2669 at 2857.478 kb on - strand, within Psest_2669 at 2857.478 kb on - strand, within Psest_2669 at 2857.478 kb on - strand, within Psest_2669 at 2857.478 kb on - strand, within Psest_2669 at 2857.478 kb on - strand, within Psest_2669 at 2857.478 kb on - strand, within Psest_2669 at 2858.042 kb on - strand, within Psest_2670 at 2858.042 kb on - strand, within Psest_2670 at 2858.054 kb on + strand, within Psest_2670 at 2858.075 kb on + strand, within Psest_2670 at 2858.075 kb on + strand, within Psest_2670 at 2858.075 kb on + strand, within Psest_2670 at 2858.076 kb on - strand, within Psest_2670 at 2858.076 kb on - strand, within Psest_2670 at 2858.637 kb on + strand at 2858.638 kb on - strand at 2858.638 kb on - strand at 2858.638 kb on - strand at 2859.053 kb on + strand, within Psest_2671 at 2859.054 kb on - strand, within Psest_2671 at 2859.343 kb on - strand, within Psest_2671 at 2859.401 kb on - strand, within Psest_2671 at 2859.547 kb on + strand, within Psest_2671 at 2859.548 kb on - strand, within Psest_2671 at 2859.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Vancomycin 0.016 mg/ml remove 2,856,949 + Psest_2669 0.31 -1.1 2,856,949 + Psest_2669 0.31 +0.7 2,857,039 + Psest_2669 0.39 +0.7 2,857,040 - Psest_2669 0.39 +0.1 2,857,040 - Psest_2669 0.39 +0.1 2,857,275 - Psest_2669 0.59 -0.2 2,857,309 + Psest_2669 0.62 +0.1 2,857,309 + Psest_2669 0.62 -0.7 2,857,309 + Psest_2669 0.62 +1.1 2,857,309 + Psest_2669 0.62 -0.7 2,857,309 + Psest_2669 0.62 +0.7 2,857,309 + Psest_2669 0.62 +1.7 2,857,309 + Psest_2669 0.62 +1.7 2,857,309 + Psest_2669 0.62 +0.9 2,857,310 - Psest_2669 0.62 +0.8 2,857,310 - Psest_2669 0.62 +0.1 2,857,310 - Psest_2669 0.62 +0.9 2,857,310 - Psest_2669 0.62 +2.3 2,857,310 - Psest_2669 0.62 +0.4 2,857,310 - Psest_2669 0.62 -1.1 2,857,426 + Psest_2669 0.72 +1.3 2,857,426 + Psest_2669 0.72 +0.3 2,857,426 + Psest_2669 0.72 +1.7 2,857,427 - Psest_2669 0.72 -0.7 2,857,427 - Psest_2669 0.72 +1.0 2,857,477 + Psest_2669 0.77 -0.3 2,857,477 + Psest_2669 0.77 +0.3 2,857,477 + Psest_2669 0.77 +1.7 2,857,477 + Psest_2669 0.77 +0.9 2,857,477 + Psest_2669 0.77 +1.7 2,857,477 + Psest_2669 0.77 -0.3 2,857,477 + Psest_2669 0.77 +1.7 2,857,477 + Psest_2669 0.77 +0.7 2,857,477 + Psest_2669 0.77 +0.7 2,857,477 + Psest_2669 0.77 -0.3 2,857,477 + Psest_2669 0.77 +1.2 2,857,477 + Psest_2669 0.77 +2.3 2,857,477 + Psest_2669 0.77 +1.4 2,857,477 + Psest_2669 0.77 +1.7 2,857,477 + Psest_2669 0.77 +0.4 2,857,478 - Psest_2669 0.77 -0.1 2,857,478 - Psest_2669 0.77 +0.1 2,857,478 - Psest_2669 0.77 +0.1 2,857,478 - Psest_2669 0.77 -1.1 2,857,478 - Psest_2669 0.77 -1.5 2,857,478 - Psest_2669 0.77 -1.3 2,857,478 - Psest_2669 0.77 -0.1 2,858,042 - Psest_2670 0.26 +0.1 2,858,042 - Psest_2670 0.26 +1.7 2,858,054 + Psest_2670 0.28 +0.1 2,858,075 + Psest_2670 0.30 +0.8 2,858,075 + Psest_2670 0.30 +0.6 2,858,075 + Psest_2670 0.30 -1.3 2,858,076 - Psest_2670 0.31 +2.7 2,858,076 - Psest_2670 0.31 +1.7 2,858,637 + +0.3 2,858,638 - -0.7 2,858,638 - +0.9 2,858,638 - +1.1 2,859,053 + Psest_2671 0.31 -0.3 2,859,054 - Psest_2671 0.32 +0.4 2,859,343 - Psest_2671 0.64 -0.7 2,859,401 - Psest_2671 0.70 -0.9 2,859,547 + Psest_2671 0.87 +0.3 2,859,548 - Psest_2671 0.87 +1.7 2,859,618 - +2.7
Or see this region's nucleotide sequence